Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1276 and Psyr_1277 are separated by 103 nucleotides
Psyr_1276: Psyr_1276 - conserved hypothetical protein, at 1,441,772 to 1,442,239
_1276
Psyr_1277: Psyr_1277 - formate-dependent phosphoribosylglycinamide formyltransferase, at 1,442,343 to 1,443,524
_1277
Position (kb)
1441
1442
1443 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1440.841 kb on + strand at 1440.864 kb on + strand at 1441.170 kb on + strand at 1441.193 kb on + strand at 1441.735 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1442.102 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.302 kb on - strand at 1442.386 kb on + strand at 1442.387 kb on - strand at 1442.764 kb on - strand, within Psyr_1277 at 1443.030 kb on + strand, within Psyr_1277 at 1443.031 kb on - strand, within Psyr_1277
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 1,440,841 + -0.1 1,440,864 + +2.3 1,441,170 + +1.9 1,441,193 + -1.2 1,441,735 + +0.9 1,441,790 + +0.8 1,441,790 + +0.3 1,441,790 + +0.1 1,441,955 + Psyr_1276 0.39 +1.7 1,441,955 + Psyr_1276 0.39 +0.7 1,441,955 + Psyr_1276 0.39 +0.7 1,441,955 + Psyr_1276 0.39 +0.0 1,441,955 + Psyr_1276 0.39 +0.9 1,441,955 + Psyr_1276 0.39 +1.5 1,441,956 - Psyr_1276 0.39 +0.5 1,441,956 - Psyr_1276 0.39 +0.9 1,441,956 - Psyr_1276 0.39 -0.4 1,441,956 - Psyr_1276 0.39 -0.1 1,441,956 - +2.2 1,441,956 - Psyr_1276 0.39 -0.4 1,441,956 - Psyr_1276 0.39 -0.3 1,441,956 - Psyr_1276 0.39 +1.1 1,441,956 - Psyr_1276 0.39 +0.5 1,441,956 - Psyr_1276 0.39 -1.1 1,442,102 - Psyr_1276 0.71 +0.1 1,442,108 - Psyr_1276 0.72 -0.1 1,442,108 - Psyr_1276 0.72 +0.2 1,442,108 - Psyr_1276 0.72 +1.2 1,442,108 - Psyr_1276 0.72 +0.2 1,442,108 - Psyr_1276 0.72 -0.9 1,442,108 - Psyr_1276 0.72 -2.7 1,442,302 - -0.5 1,442,386 + +1.4 1,442,387 - -1.4 1,442,764 - Psyr_1277 0.36 +1.2 1,443,030 + Psyr_1277 0.58 +2.9 1,443,031 - Psyr_1277 0.58 +0.7
Or see this region's nucleotide sequence