Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1169

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1168 and Psyr_1169 are separated by 9 nucleotidesPsyr_1169 and Psyr_1170 are separated by 14 nucleotides Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709 _1168 Psyr_1169: Psyr_1169 - nucleoside-binding protein, at 1,322,719 to 1,323,828 _1169 Psyr_1170: Psyr_1170 - Amidase, at 1,323,843 to 1,325,663 _1170 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.653 kb on - strandat 1322.653 kb on - strandat 1322.750 kb on + strandat 1322.750 kb on + strandat 1322.750 kb on + strandat 1322.751 kb on - strandat 1322.751 kb on - strandat 1322.925 kb on - strand, within Psyr_1169at 1323.053 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.387 kb on - strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.521 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.711 kb on - strand, within Psyr_1169at 1323.711 kb on - strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.747 kb on - strandat 1323.898 kb on + strandat 1324.056 kb on + strand, within Psyr_1170at 1324.056 kb on + strand, within Psyr_1170at 1324.056 kb on + strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.129 kb on + strandat 1324.130 kb on - strand, within Psyr_1170at 1324.130 kb on - strand, within Psyr_1170at 1324.256 kb on + strand, within Psyr_1170at 1324.256 kb on + strand, within Psyr_1170at 1324.257 kb on - strand, within Psyr_1170at 1324.258 kb on + strand, within Psyr_1170at 1324.259 kb on - strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.738 kb on + strand, within Psyr_1170at 1324.739 kb on - strand, within Psyr_1170

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,322,072 + Psyr_1168 0.43 +0.6
1,322,072 + Psyr_1168 0.43 +1.5
1,322,072 + Psyr_1168 0.43 -1.2
1,322,072 + Psyr_1168 0.43 +1.5
1,322,072 + Psyr_1168 0.43 +0.9
1,322,072 + Psyr_1168 0.43 -0.1
1,322,073 - Psyr_1168 0.43 -0.1
1,322,073 - Psyr_1168 0.43 +0.6
1,322,073 - Psyr_1168 0.43 +0.7
1,322,073 - Psyr_1168 0.43 +1.5
1,322,073 - Psyr_1168 0.43 -0.5
1,322,073 - Psyr_1168 0.43 -0.5
1,322,073 - Psyr_1168 0.43 +0.8
1,322,073 - Psyr_1168 0.43 +0.1
1,322,073 - Psyr_1168 0.43 +0.2
1,322,148 + Psyr_1168 0.49 +0.5
1,322,148 + Psyr_1168 0.49 -1.8
1,322,148 + Psyr_1168 0.49 +0.9
1,322,148 + Psyr_1168 0.49 -0.5
1,322,148 + Psyr_1168 0.49 +0.2
1,322,148 + Psyr_1168 0.49 +0.4
1,322,149 - Psyr_1168 0.49 +0.9
1,322,149 - Psyr_1168 0.49 -0.1
1,322,149 - Psyr_1168 0.49 +2.2
1,322,149 - Psyr_1168 0.49 -0.1
1,322,149 - Psyr_1168 0.49 +0.9
1,322,150 + Psyr_1168 0.50 -2.6
1,322,150 + Psyr_1168 0.50 +0.5
1,322,150 + Psyr_1168 0.50 -0.1
1,322,150 + Psyr_1168 0.50 +0.9
1,322,150 + Psyr_1168 0.50 +0.6
1,322,150 + Psyr_1168 0.50 +0.1
1,322,150 + Psyr_1168 0.50 -0.6
1,322,150 + Psyr_1168 0.50 +0.2
1,322,150 + Psyr_1168 0.50 -1.2
1,322,150 + Psyr_1168 0.50 +1.3
1,322,150 + Psyr_1168 0.50 +0.4
1,322,150 + Psyr_1168 0.50 -1.2
1,322,150 + Psyr_1168 0.50 +0.5
1,322,150 + Psyr_1168 0.50 -1.5
1,322,150 + Psyr_1168 0.50 -0.3
1,322,150 + Psyr_1168 0.50 +0.9
1,322,151 - Psyr_1168 0.50 +2.1
1,322,151 - Psyr_1168 0.50 -0.1
1,322,151 - Psyr_1168 0.50 +0.6
1,322,151 - Psyr_1168 0.50 -1.5
1,322,151 - Psyr_1168 0.50 +0.1
1,322,151 - Psyr_1168 0.50 +0.9
1,322,151 - Psyr_1168 0.50 -1.1
1,322,151 - Psyr_1168 0.50 -0.9
1,322,151 - Psyr_1168 0.50 -0.5
1,322,151 - Psyr_1168 0.50 -0.6
1,322,151 - Psyr_1168 0.50 -2.2
1,322,151 - Psyr_1168 0.50 +0.9
1,322,247 - Psyr_1168 0.58 -1.2
1,322,247 - Psyr_1168 0.58 +1.1
1,322,247 - Psyr_1168 0.58 -0.1
1,322,247 - Psyr_1168 0.58 +0.9
1,322,247 - Psyr_1168 0.58 -0.4
1,322,653 - +0.7
1,322,653 - +0.5
1,322,750 + +1.5
1,322,750 + +0.4
1,322,750 + +0.9
1,322,751 - -0.2
1,322,751 - -0.4
1,322,925 - Psyr_1169 0.19 +0.9
1,323,053 + Psyr_1169 0.30 +0.9
1,323,163 + Psyr_1169 0.40 +1.8
1,323,163 + Psyr_1169 0.40 +0.9
1,323,163 + Psyr_1169 0.40 +0.4
1,323,163 + Psyr_1169 0.40 +0.9
1,323,164 - Psyr_1169 0.40 -1.1
1,323,164 - Psyr_1169 0.40 +0.2
1,323,164 - Psyr_1169 0.40 +0.3
1,323,386 + Psyr_1169 0.60 -0.4
1,323,386 + Psyr_1169 0.60 +0.5
1,323,387 - Psyr_1169 0.60 -0.3
1,323,404 + Psyr_1169 0.62 +1.2
1,323,404 + Psyr_1169 0.62 -0.3
1,323,521 + Psyr_1169 0.72 +0.8
1,323,710 + Psyr_1169 0.89 -1.9
1,323,710 + Psyr_1169 0.89 +0.3
1,323,710 + Psyr_1169 0.89 +1.3
1,323,711 - Psyr_1169 0.89 +0.3
1,323,711 - Psyr_1169 0.89 +0.3
1,323,714 + Psyr_1169 0.90 -0.9
1,323,714 + Psyr_1169 0.90 -0.3
1,323,714 + Psyr_1169 0.90 -0.1
1,323,714 + Psyr_1169 0.90 +0.5
1,323,714 + Psyr_1169 0.90 +0.1
1,323,714 + Psyr_1169 0.90 -0.6
1,323,715 - Psyr_1169 0.90 -0.5
1,323,715 - Psyr_1169 0.90 +0.6
1,323,715 - Psyr_1169 0.90 -0.6
1,323,747 - +3.5
1,323,898 + -0.8
1,324,056 + Psyr_1170 0.12 +0.9
1,324,056 + Psyr_1170 0.12 -0.6
1,324,056 + Psyr_1170 0.12 -0.5
1,324,057 - Psyr_1170 0.12 +1.5
1,324,057 - Psyr_1170 0.12 -0.6
1,324,057 - Psyr_1170 0.12 -0.2
1,324,129 + -0.1
1,324,130 - Psyr_1170 0.16 -1.0
1,324,130 - Psyr_1170 0.16 -0.1
1,324,256 + Psyr_1170 0.23 +0.3
1,324,256 + Psyr_1170 0.23 -0.1
1,324,257 - Psyr_1170 0.23 -0.8
1,324,258 + Psyr_1170 0.23 -1.1
1,324,259 - Psyr_1170 0.23 -1.0
1,324,456 + Psyr_1170 0.34 -1.3
1,324,456 + Psyr_1170 0.34 +0.7
1,324,456 + Psyr_1170 0.34 +1.2
1,324,457 - Psyr_1170 0.34 -0.5
1,324,457 - Psyr_1170 0.34 -0.6
1,324,457 - Psyr_1170 0.34 +0.1
1,324,457 - Psyr_1170 0.34 +0.2
1,324,738 + Psyr_1170 0.49 -1.9
1,324,739 - Psyr_1170 0.49 -0.1

Or see this region's nucleotide sequence