Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1028

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1027 and Psyr_1028 are separated by 81 nucleotidesPsyr_1028 and Psyr_1029 are separated by 31 nucleotides Psyr_1027: Psyr_1027 - conserved hypothetical protein, at 1,157,518 to 1,158,321 _1027 Psyr_1028: Psyr_1028 - conserved hypothetical protein, at 1,158,403 to 1,159,275 _1028 Psyr_1029: Psyr_1029 - Peptidase aspartic, active site, at 1,159,307 to 1,161,271 _1029 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1157.542 kb on + strandat 1157.543 kb on - strandat 1157.543 kb on - strandat 1157.651 kb on + strand, within Psyr_1027at 1157.651 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.814 kb on + strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1157.815 kb on - strand, within Psyr_1027at 1157.883 kb on - strand, within Psyr_1027at 1158.175 kb on + strand, within Psyr_1027at 1158.365 kb on + strandat 1158.421 kb on + strandat 1158.421 kb on + strandat 1158.421 kb on + strandat 1158.421 kb on + strandat 1158.421 kb on + strandat 1158.422 kb on - strandat 1158.422 kb on - strandat 1158.422 kb on - strandat 1158.422 kb on - strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.440 kb on + strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.441 kb on - strandat 1158.461 kb on + strandat 1158.462 kb on - strandat 1158.535 kb on + strand, within Psyr_1028at 1158.568 kb on + strand, within Psyr_1028at 1158.568 kb on + strand, within Psyr_1028at 1158.569 kb on - strand, within Psyr_1028at 1158.608 kb on + strand, within Psyr_1028at 1158.608 kb on + strand, within Psyr_1028at 1158.608 kb on + strand, within Psyr_1028at 1158.608 kb on + strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.609 kb on - strand, within Psyr_1028at 1158.738 kb on - strand, within Psyr_1028at 1158.831 kb on - strand, within Psyr_1028at 1159.102 kb on + strand, within Psyr_1028at 1159.103 kb on - strand, within Psyr_1028at 1159.103 kb on - strand, within Psyr_1028at 1159.175 kb on + strand, within Psyr_1028at 1159.175 kb on + strand, within Psyr_1028at 1159.176 kb on - strandat 1159.176 kb on - strand, within Psyr_1028at 1159.176 kb on - strand, within Psyr_1028at 1159.176 kb on - strand, within Psyr_1028at 1159.176 kb on - strand, within Psyr_1028at 1159.176 kb on - strand, within Psyr_1028at 1159.280 kb on + strandat 1159.281 kb on - strandat 1159.395 kb on + strandat 1159.395 kb on + strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.396 kb on - strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.413 kb on + strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.414 kb on - strandat 1159.417 kb on + strandat 1159.418 kb on - strandat 1159.626 kb on + strand, within Psyr_1029at 1159.626 kb on + strand, within Psyr_1029at 1159.626 kb on + strand, within Psyr_1029at 1159.627 kb on - strand, within Psyr_1029at 1159.627 kb on - strand, within Psyr_1029at 1159.627 kb on - strand, within Psyr_1029at 1159.665 kb on + strand, within Psyr_1029at 1159.690 kb on + strand, within Psyr_1029at 1159.691 kb on + strand, within Psyr_1029at 1159.691 kb on + strand, within Psyr_1029at 1159.692 kb on - strand, within Psyr_1029at 1159.728 kb on + strand, within Psyr_1029at 1160.166 kb on + strand, within Psyr_1029at 1160.166 kb on + strand, within Psyr_1029at 1160.269 kb on + strand, within Psyr_1029

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,157,542 + -0.3
1,157,543 - +1.5
1,157,543 - +0.3
1,157,651 + Psyr_1027 0.17 +0.6
1,157,651 + Psyr_1027 0.17 -0.1
1,157,814 + Psyr_1027 0.37 -0.4
1,157,814 + Psyr_1027 0.37 +0.8
1,157,814 + Psyr_1027 0.37 -1.1
1,157,814 + Psyr_1027 0.37 -0.3
1,157,814 + Psyr_1027 0.37 -0.2
1,157,814 + Psyr_1027 0.37 -0.1
1,157,814 + Psyr_1027 0.37 +0.3
1,157,814 + Psyr_1027 0.37 -1.4
1,157,814 + Psyr_1027 0.37 +1.7
1,157,814 + Psyr_1027 0.37 +1.3
1,157,814 + Psyr_1027 0.37 -0.7
1,157,814 + Psyr_1027 0.37 +0.6
1,157,814 + Psyr_1027 0.37 +0.6
1,157,815 - Psyr_1027 0.37 +1.4
1,157,815 - Psyr_1027 0.37 -1.7
1,157,815 - Psyr_1027 0.37 +1.7
1,157,815 - Psyr_1027 0.37 +1.2
1,157,815 - Psyr_1027 0.37 -1.3
1,157,883 - Psyr_1027 0.45 +0.5
1,158,175 + Psyr_1027 0.82 +1.3
1,158,365 + -0.3
1,158,421 + -0.3
1,158,421 + -0.0
1,158,421 + +0.5
1,158,421 + +1.4
1,158,421 + +0.4
1,158,422 - -1.5
1,158,422 - -0.6
1,158,422 - +0.4
1,158,422 - -0.2
1,158,440 + +0.1
1,158,440 + -0.5
1,158,440 + +0.4
1,158,440 + +0.6
1,158,440 + +0.2
1,158,440 + +0.6
1,158,440 + -1.4
1,158,441 - +1.8
1,158,441 - -1.1
1,158,441 - +1.7
1,158,441 - -0.3
1,158,441 - +0.5
1,158,461 + -1.0
1,158,462 - +1.9
1,158,535 + Psyr_1028 0.15 -1.5
1,158,568 + Psyr_1028 0.19 -1.0
1,158,568 + Psyr_1028 0.19 -0.1
1,158,569 - Psyr_1028 0.19 +0.4
1,158,608 + Psyr_1028 0.23 +1.6
1,158,608 + Psyr_1028 0.23 +1.2
1,158,608 + Psyr_1028 0.23 +0.6
1,158,608 + Psyr_1028 0.23 +0.1
1,158,609 - Psyr_1028 0.24 +0.5
1,158,609 - Psyr_1028 0.24 +0.2
1,158,609 - Psyr_1028 0.24 +0.4
1,158,738 - Psyr_1028 0.38 +0.9
1,158,831 - Psyr_1028 0.49 -0.1
1,159,102 + Psyr_1028 0.80 -1.1
1,159,103 - Psyr_1028 0.80 +0.3
1,159,103 - Psyr_1028 0.80 +0.0
1,159,175 + Psyr_1028 0.88 -0.4
1,159,175 + Psyr_1028 0.88 +0.0
1,159,176 - -0.1
1,159,176 - Psyr_1028 0.89 -0.1
1,159,176 - Psyr_1028 0.89 +1.1
1,159,176 - Psyr_1028 0.89 +1.2
1,159,176 - Psyr_1028 0.89 +0.1
1,159,176 - Psyr_1028 0.89 -0.2
1,159,280 + -0.6
1,159,281 - +0.8
1,159,395 + +0.0
1,159,395 + -0.5
1,159,396 - +0.9
1,159,396 - +0.2
1,159,396 - -0.9
1,159,396 - -1.9
1,159,396 - +0.9
1,159,413 + -0.3
1,159,413 + +0.6
1,159,413 + +0.0
1,159,413 + +0.5
1,159,413 + -1.4
1,159,413 + +1.1
1,159,413 + +0.9
1,159,414 - +0.3
1,159,414 - +0.3
1,159,414 - -0.7
1,159,414 - -0.8
1,159,414 - +0.1
1,159,414 - -0.9
1,159,414 - -0.1
1,159,414 - -0.2
1,159,414 - +0.3
1,159,414 - +0.9
1,159,414 - -0.6
1,159,414 - -1.7
1,159,414 - +1.1
1,159,414 - -0.1
1,159,414 - +0.6
1,159,417 + +0.5
1,159,418 - -1.7
1,159,626 + Psyr_1029 0.16 +0.3
1,159,626 + Psyr_1029 0.16 -0.4
1,159,626 + Psyr_1029 0.16 -1.2
1,159,627 - Psyr_1029 0.16 -0.8
1,159,627 - Psyr_1029 0.16 -0.3
1,159,627 - Psyr_1029 0.16 +0.7
1,159,665 + Psyr_1029 0.18 -0.6
1,159,690 + Psyr_1029 0.19 +0.9
1,159,691 + Psyr_1029 0.20 +0.2
1,159,691 + Psyr_1029 0.20 +0.3
1,159,692 - Psyr_1029 0.20 -2.5
1,159,728 + Psyr_1029 0.21 +0.1
1,160,166 + Psyr_1029 0.44 +0.9
1,160,166 + Psyr_1029 0.44 -0.3
1,160,269 + Psyr_1029 0.49 -2.1

Or see this region's nucleotide sequence