Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0714 and Psyr_0715 are separated by 131 nucleotides Psyr_0715 and Psyr_0716 overlap by 1 nucleotides Psyr_0716 and Psyr_0717 overlap by 4 nucleotides Psyr_0717 and Psyr_0718 are separated by 11 nucleotides
Psyr_0714: Psyr_0714 - type IV pilus biogenesis protein, at 818,332 to 818,832
_0714
Psyr_0715: Psyr_0715 - pillin, putative, at 818,964 to 819,437
_0715
Psyr_0716: Psyr_0716 - type IV pilus assembly protein PilV, at 819,437 to 819,952
_0716
Psyr_0717: Psyr_0717 - type IV pilus assembly protein PilW, at 819,949 to 820,656
_0717
Psyr_0718: Psyr_0718 - type IV pilus assembly protein PilX, at 820,668 to 821,162
_0718
Position (kb) 819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.535 kb on + strand, within Psyr_0714 at 818.548 kb on + strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.596 kb on + strand, within Psyr_0714 at 818.596 kb on + strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.800 kb on + strand at 818.800 kb on + strand at 818.832 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.899 kb on - strand at 818.899 kb on - strand at 818.936 kb on + strand at 818.936 kb on + strand at 818.936 kb on + strand at 818.937 kb on - strand at 818.937 kb on - strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.951 kb on + strand at 818.972 kb on + strand at 818.972 kb on + strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.975 kb on - strand at 818.975 kb on - strand at 819.004 kb on + strand at 819.044 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.391 kb on + strand at 819.392 kb on - strand at 819.392 kb on - strand at 819.557 kb on + strand, within Psyr_0716 at 819.557 kb on + strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.602 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.641 kb on - strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.670 kb on - strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.677 kb on - strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 820.037 kb on + strand, within Psyr_0717 at 820.037 kb on + strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.185 kb on - strand, within Psyr_0717 at 820.185 kb on - strand, within Psyr_0717 at 820.194 kb on + strand, within Psyr_0717 at 820.291 kb on - strand, within Psyr_0717 at 820.326 kb on + strand, within Psyr_0717 at 820.339 kb on + strand, within Psyr_0717 at 820.340 kb on - strand, within Psyr_0717 at 820.399 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.520 kb on - strand, within Psyr_0717 at 820.521 kb on + strand, within Psyr_0717 at 820.522 kb on - strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.557 kb on - strand, within Psyr_0717 at 820.621 kb on + strand at 820.621 kb on + strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.636 kb on + strand at 820.637 kb on - strand at 820.637 kb on - strand at 820.637 kb on - strand at 820.835 kb on + strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.920 kb on - strand, within Psyr_0718
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 818,535 + Psyr_0714 0.41 -0.6 818,548 + Psyr_0714 0.43 +1.9 818,549 - Psyr_0714 0.43 +0.3 818,549 - Psyr_0714 0.43 +0.8 818,549 - Psyr_0714 0.43 +0.5 818,549 - Psyr_0714 0.43 -0.5 818,549 - Psyr_0714 0.43 -2.0 818,596 + Psyr_0714 0.53 +0.3 818,596 + Psyr_0714 0.53 -0.5 818,597 - Psyr_0714 0.53 -0.2 818,597 - Psyr_0714 0.53 +1.1 818,597 - Psyr_0714 0.53 +0.4 818,800 + +0.2 818,800 + -0.8 818,832 + +0.2 818,898 + +0.7 818,898 + -0.3 818,898 + +0.2 818,899 - -0.4 818,899 - +0.2 818,936 + +0.7 818,936 + +1.7 818,936 + +0.1 818,937 - -0.4 818,937 - +1.0 818,938 + +0.7 818,938 + -0.7 818,938 + -2.4 818,938 + +1.2 818,939 - -1.7 818,939 - -0.6 818,939 - -0.0 818,939 - -0.1 818,939 - +0.2 818,951 + +0.5 818,972 + +0.2 818,972 + +0.2 818,973 - +0.9 818,973 - +1.9 818,973 - -0.5 818,973 - -1.1 818,973 - -0.7 818,973 - -0.2 818,974 + +0.9 818,974 + -0.0 818,974 + +1.0 818,974 + -0.7 818,974 + -0.3 818,974 + +0.2 818,975 - -0.1 818,975 - -0.1 819,004 + +0.1 819,044 + Psyr_0715 0.17 -0.7 819,120 + Psyr_0715 0.33 +0.2 819,120 + Psyr_0715 0.33 -0.1 819,120 + Psyr_0715 0.33 -0.1 819,120 + Psyr_0715 0.33 -1.8 819,121 - Psyr_0715 0.33 -1.4 819,121 - Psyr_0715 0.33 +0.7 819,121 - Psyr_0715 0.33 -0.3 819,121 - Psyr_0715 0.33 +0.9 819,121 - Psyr_0715 0.33 +1.1 819,121 - Psyr_0715 0.33 -0.7 819,207 + Psyr_0715 0.51 -0.4 819,207 + Psyr_0715 0.51 +0.0 819,207 + Psyr_0715 0.51 -0.4 819,207 + Psyr_0715 0.51 -0.2 819,207 + Psyr_0715 0.51 +0.7 819,207 + Psyr_0715 0.51 +0.2 819,207 + Psyr_0715 0.51 -0.4 819,207 + Psyr_0715 0.51 +0.3 819,207 + Psyr_0715 0.51 +1.1 819,208 - Psyr_0715 0.51 +0.5 819,208 - Psyr_0715 0.51 +0.3 819,208 - Psyr_0715 0.51 -1.7 819,208 - Psyr_0715 0.51 -0.3 819,363 + Psyr_0715 0.84 +0.1 819,363 + Psyr_0715 0.84 -2.1 819,363 + Psyr_0715 0.84 -0.2 819,364 - Psyr_0715 0.84 +0.7 819,364 - Psyr_0715 0.84 +0.6 819,364 - Psyr_0715 0.84 -0.0 819,364 - Psyr_0715 0.84 -1.1 819,364 - Psyr_0715 0.84 -0.4 819,391 + -1.0 819,392 - -0.7 819,392 - +0.1 819,557 + Psyr_0716 0.23 +0.9 819,557 + Psyr_0716 0.23 +0.7 819,558 - Psyr_0716 0.23 +0.7 819,558 - Psyr_0716 0.23 -0.3 819,558 - Psyr_0716 0.23 +1.5 819,602 + Psyr_0716 0.32 -0.7 819,640 + Psyr_0716 0.39 +1.5 819,640 + Psyr_0716 0.39 +0.5 819,641 - Psyr_0716 0.40 +1.0 819,669 + Psyr_0716 0.45 +1.0 819,669 + Psyr_0716 0.45 -0.3 819,670 - Psyr_0716 0.45 +0.6 819,676 + Psyr_0716 0.46 +2.1 819,676 + Psyr_0716 0.46 +1.4 819,676 + Psyr_0716 0.46 +1.1 819,677 - Psyr_0716 0.47 +1.6 819,680 + Psyr_0716 0.47 -0.7 819,680 + Psyr_0716 0.47 +0.5 819,680 + Psyr_0716 0.47 +2.3 819,680 + Psyr_0716 0.47 -1.2 819,680 + Psyr_0716 0.47 +0.4 819,681 - Psyr_0716 0.47 +0.4 819,681 - Psyr_0716 0.47 -0.7 819,681 - Psyr_0716 0.47 +0.6 819,681 - Psyr_0716 0.47 +2.0 819,681 - Psyr_0716 0.47 +0.1 819,682 + Psyr_0716 0.47 +1.1 819,682 + Psyr_0716 0.47 -1.8 819,683 - Psyr_0716 0.48 +1.1 819,683 - Psyr_0716 0.48 +0.0 819,683 - Psyr_0716 0.48 +0.5 819,683 - Psyr_0716 0.48 +1.2 819,683 - Psyr_0716 0.48 -2.8 819,683 - Psyr_0716 0.48 -0.7 819,683 - Psyr_0716 0.48 -0.9 819,817 + Psyr_0716 0.74 -0.7 819,817 + Psyr_0716 0.74 +0.7 819,817 + Psyr_0716 0.74 +0.2 819,817 + Psyr_0716 0.74 +0.2 819,817 + Psyr_0716 0.74 +1.0 819,818 - Psyr_0716 0.74 -0.1 819,818 - Psyr_0716 0.74 +1.3 819,818 - Psyr_0716 0.74 -0.4 819,818 - Psyr_0716 0.74 -0.6 819,818 - Psyr_0716 0.74 -0.5 820,037 + Psyr_0717 0.12 +0.0 820,037 + Psyr_0717 0.12 -0.5 820,038 - Psyr_0717 0.13 -0.3 820,061 - Psyr_0717 0.16 -0.1 820,061 - Psyr_0717 0.16 -0.0 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +1.2 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +0.9 820,150 + Psyr_0717 0.28 +0.4 820,150 + Psyr_0717 0.28 +2.5 820,150 + Psyr_0717 0.28 +0.0 820,150 + Psyr_0717 0.28 -0.4 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 +0.2 820,150 + Psyr_0717 0.28 +0.0 820,150 + Psyr_0717 0.28 +1.3 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +0.4 820,150 + Psyr_0717 0.28 +1.5 820,150 + Psyr_0717 0.28 +0.5 820,150 + Psyr_0717 0.28 -0.4 820,150 + Psyr_0717 0.28 +0.2 820,150 + Psyr_0717 0.28 -1.3 820,150 + Psyr_0717 0.28 -1.0 820,151 - Psyr_0717 0.29 -1.8 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 +0.7 820,151 - Psyr_0717 0.29 -0.5 820,151 - Psyr_0717 0.29 +1.3 820,151 - Psyr_0717 0.29 -0.6 820,151 - Psyr_0717 0.29 -0.1 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 +0.3 820,151 - Psyr_0717 0.29 +1.6 820,151 - Psyr_0717 0.29 -0.2 820,151 - Psyr_0717 0.29 +1.1 820,151 - Psyr_0717 0.29 +0.2 820,151 - Psyr_0717 0.29 +1.5 820,151 - Psyr_0717 0.29 +0.2 820,151 - Psyr_0717 0.29 +0.9 820,151 - Psyr_0717 0.29 +0.3 820,151 - Psyr_0717 0.29 -0.1 820,151 - Psyr_0717 0.29 -1.4 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 -0.1 820,151 - Psyr_0717 0.29 +0.9 820,151 - Psyr_0717 0.29 -0.6 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 +0.3 820,151 - Psyr_0717 0.29 +0.3 820,151 - Psyr_0717 0.29 -0.6 820,151 - Psyr_0717 0.29 +2.2 820,174 + Psyr_0717 0.32 +0.3 820,174 + Psyr_0717 0.32 +0.2 820,174 + Psyr_0717 0.32 +0.3 820,174 + Psyr_0717 0.32 +0.2 820,175 - Psyr_0717 0.32 +0.6 820,175 - Psyr_0717 0.32 +0.2 820,175 - Psyr_0717 0.32 +1.2 820,175 - Psyr_0717 0.32 +0.0 820,175 - Psyr_0717 0.32 -0.7 820,184 + Psyr_0717 0.33 -0.6 820,184 + Psyr_0717 0.33 +0.3 820,184 + Psyr_0717 0.33 -2.3 820,185 - Psyr_0717 0.33 +1.2 820,185 - Psyr_0717 0.33 +0.3 820,194 + Psyr_0717 0.35 +0.9 820,291 - Psyr_0717 0.48 +0.4 820,326 + Psyr_0717 0.53 -0.6 820,339 + Psyr_0717 0.55 -1.4 820,340 - Psyr_0717 0.55 -0.7 820,399 + Psyr_0717 0.64 +0.7 820,519 + Psyr_0717 0.81 -0.1 820,519 + Psyr_0717 0.81 +0.6 820,519 + Psyr_0717 0.81 +1.5 820,519 + Psyr_0717 0.81 -0.1 820,520 - Psyr_0717 0.81 +0.7 820,521 + Psyr_0717 0.81 -0.7 820,522 - Psyr_0717 0.81 +0.3 820,556 + Psyr_0717 0.86 -0.3 820,556 + Psyr_0717 0.86 +0.5 820,556 + Psyr_0717 0.86 -0.9 820,556 + Psyr_0717 0.86 -0.7 820,557 - Psyr_0717 0.86 +0.2 820,621 + +0.3 820,621 + +0.0 820,622 - +0.3 820,622 - +0.4 820,622 - -0.2 820,636 + -0.3 820,637 - +0.3 820,637 - -0.4 820,637 - +1.1 820,835 + Psyr_0718 0.34 +0.1 820,836 - Psyr_0718 0.34 +1.1 820,836 - Psyr_0718 0.34 -0.3 820,836 - Psyr_0718 0.34 +1.6 820,836 - Psyr_0718 0.34 +1.5 820,920 - Psyr_0718 0.51 +0.5
Or see this region's nucleotide sequence