Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0459

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0458 and Psyr_0459 are separated by 311 nucleotidesPsyr_0459 and Psyr_0460 are separated by 189 nucleotides Psyr_0458: Psyr_0458 - Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal, at 494,944 to 496,833 _0458 Psyr_0459: Psyr_0459 - 5,10-methylenetetrahydrofolate reductase, at 497,145 to 497,990 _0459 Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589 _0460 Position (kb) 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 496.258 kb on - strand, within Psyr_0458at 496.683 kb on + strandat 496.684 kb on - strandat 496.837 kb on + strandat 496.837 kb on + strandat 496.837 kb on + strandat 496.858 kb on + strandat 496.858 kb on + strandat 496.858 kb on + strandat 496.858 kb on + strandat 496.897 kb on - strandat 497.042 kb on + strandat 497.042 kb on + strandat 497.043 kb on - strandat 497.043 kb on - strandat 497.043 kb on - strandat 497.044 kb on + strandat 497.044 kb on + strandat 497.044 kb on + strandat 497.045 kb on - strandat 497.045 kb on - strandat 497.045 kb on - strandat 497.061 kb on + strandat 497.089 kb on + strandat 497.089 kb on + strandat 497.090 kb on - strandat 497.090 kb on - strandat 497.090 kb on - strandat 497.207 kb on - strandat 497.207 kb on - strandat 497.306 kb on - strand, within Psyr_0459at 497.322 kb on - strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.380 kb on + strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.381 kb on - strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.458 kb on + strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.459 kb on - strand, within Psyr_0459at 497.479 kb on + strand, within Psyr_0459at 497.479 kb on + strand, within Psyr_0459at 497.479 kb on + strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.480 kb on - strand, within Psyr_0459at 497.728 kb on + strand, within Psyr_0459at 497.729 kb on - strand, within Psyr_0459at 497.729 kb on - strand, within Psyr_0459at 497.769 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.866 kb on + strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.867 kb on - strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.893 kb on + strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.894 kb on - strand, within Psyr_0459at 497.951 kb on + strandat 498.013 kb on + strandat 498.014 kb on - strandat 498.014 kb on - strandat 498.014 kb on - strandat 498.024 kb on + strandat 498.025 kb on - strandat 498.044 kb on + strandat 498.045 kb on - strandat 498.045 kb on - strandat 498.087 kb on + strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.174 kb on + strandat 498.175 kb on - strandat 498.175 kb on - strandat 498.175 kb on - strandat 498.175 kb on - strandat 498.178 kb on + strandat 498.178 kb on + strandat 498.178 kb on + strandat 498.178 kb on + strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strandat 498.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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496,258 - Psyr_0458 0.70 -0.5
496,683 + +0.6
496,684 - +0.3
496,837 + -1.9
496,837 + +0.1
496,837 + +0.8
496,858 + +0.2
496,858 + +0.2
496,858 + +0.4
496,858 + -1.0
496,897 - +0.2
497,042 + +0.3
497,042 + +0.2
497,043 - -0.1
497,043 - +0.2
497,043 - -0.1
497,044 + -0.7
497,044 + -0.4
497,044 + -2.3
497,045 - -0.8
497,045 - +1.0
497,045 - -0.1
497,061 + -2.4
497,089 + -0.1
497,089 + +2.2
497,090 - +0.1
497,090 - -0.4
497,090 - +1.7
497,207 - +1.3
497,207 - +0.0
497,306 - Psyr_0459 0.19 +1.3
497,322 - Psyr_0459 0.21 +0.5
497,380 + Psyr_0459 0.28 +0.1
497,380 + Psyr_0459 0.28 -1.1
497,380 + Psyr_0459 0.28 +0.4
497,380 + Psyr_0459 0.28 +0.8
497,380 + Psyr_0459 0.28 -0.1
497,381 - Psyr_0459 0.28 -0.7
497,381 - Psyr_0459 0.28 +0.8
497,381 - Psyr_0459 0.28 +1.5
497,381 - Psyr_0459 0.28 +0.7
497,381 - Psyr_0459 0.28 +0.3
497,458 + Psyr_0459 0.37 -0.4
497,458 + Psyr_0459 0.37 +0.3
497,458 + Psyr_0459 0.37 +1.6
497,458 + Psyr_0459 0.37 -0.7
497,458 + Psyr_0459 0.37 +0.1
497,458 + Psyr_0459 0.37 +0.9
497,458 + Psyr_0459 0.37 -0.0
497,458 + Psyr_0459 0.37 +1.6
497,458 + Psyr_0459 0.37 -3.2
497,459 - Psyr_0459 0.37 +1.2
497,459 - Psyr_0459 0.37 -0.3
497,459 - Psyr_0459 0.37 +1.6
497,479 + Psyr_0459 0.39 +1.0
497,479 + Psyr_0459 0.39 +1.7
497,479 + Psyr_0459 0.39 +0.1
497,480 - Psyr_0459 0.40 +0.9
497,480 - Psyr_0459 0.40 -0.1
497,728 + Psyr_0459 0.69 +0.1
497,729 - Psyr_0459 0.69 +0.9
497,729 - Psyr_0459 0.69 -0.1
497,769 + Psyr_0459 0.74 -0.7
497,866 + Psyr_0459 0.85 +0.8
497,866 + Psyr_0459 0.85 +0.6
497,866 + Psyr_0459 0.85 +0.7
497,866 + Psyr_0459 0.85 +0.0
497,866 + Psyr_0459 0.85 +1.2
497,867 - Psyr_0459 0.85 +0.3
497,867 - Psyr_0459 0.85 -1.0
497,867 - Psyr_0459 0.85 +1.8
497,867 - Psyr_0459 0.85 +0.5
497,867 - Psyr_0459 0.85 +0.1
497,867 - Psyr_0459 0.85 -0.8
497,893 + Psyr_0459 0.88 +1.0
497,893 + Psyr_0459 0.88 +0.6
497,893 + Psyr_0459 0.88 +0.1
497,893 + Psyr_0459 0.88 -0.2
497,893 + Psyr_0459 0.88 +0.6
497,894 - Psyr_0459 0.89 +1.6
497,894 - Psyr_0459 0.89 +2.5
497,894 - Psyr_0459 0.89 -2.3
497,894 - Psyr_0459 0.89 +0.7
497,894 - Psyr_0459 0.89 +0.4
497,894 - Psyr_0459 0.89 -0.3
497,894 - Psyr_0459 0.89 +0.8
497,951 + +0.9
498,013 + -1.7
498,014 - -1.1
498,014 - -0.2
498,014 - +0.1
498,024 + +0.2
498,025 - +0.1
498,044 + +0.4
498,045 - +0.5
498,045 - +2.9
498,087 + +3.0
498,088 - +0.6
498,088 - +1.0
498,088 - +0.4
498,088 - -0.2
498,088 - -0.2
498,174 + -2.0
498,174 + +1.1
498,174 + -0.3
498,174 + +0.1
498,174 + +0.7
498,174 + +0.1
498,175 - +1.1
498,175 - +1.9
498,175 - -1.0
498,175 - +0.9
498,178 + -1.1
498,178 + -2.4
498,178 + +0.9
498,178 + +0.9
498,179 - +0.3
498,179 - -0.0
498,179 - +1.0
498,179 - +0.4
498,179 - -1.7
498,179 - +0.6
498,179 - -0.3

Or see this region's nucleotide sequence