Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0423

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0422 and Psyr_0423 overlap by 1 nucleotidesPsyr_0423 and Psyr_0424 overlap by 4 nucleotidesPsyr_0424 and Psyr_0425 overlap by 4 nucleotides Psyr_0422: Psyr_0422 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 461,547 to 462,773 _0422 Psyr_0423: Psyr_0423 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 462,773 to 463,501 _0423 Psyr_0424: Psyr_0424 - conserved hypothetical protein, at 463,498 to 463,953 _0424 Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146 _0425 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1 2at 461.795 kb on + strand, within Psyr_0422at 461.795 kb on + strand, within Psyr_0422at 461.795 kb on + strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.796 kb on - strand, within Psyr_0422at 461.884 kb on + strand, within Psyr_0422at 462.013 kb on + strand, within Psyr_0422at 462.014 kb on - strand, within Psyr_0422at 462.014 kb on - strand, within Psyr_0422at 462.158 kb on - strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.250 kb on + strand, within Psyr_0422at 462.251 kb on - strand, within Psyr_0422at 462.251 kb on - strand, within Psyr_0422at 462.281 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.329 kb on + strand, within Psyr_0422at 462.330 kb on - strand, within Psyr_0422at 462.330 kb on - strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.370 kb on + strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.371 kb on - strand, within Psyr_0422at 462.636 kb on - strand, within Psyr_0422at 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.816 kb on + strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 462.817 kb on - strandat 463.022 kb on - strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.045 kb on - strand, within Psyr_0423at 463.112 kb on - strand, within Psyr_0423at 463.153 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.258 kb on - strand, within Psyr_0423at 463.260 kb on + strand, within Psyr_0423at 463.261 kb on - strand, within Psyr_0423at 463.523 kb on + strandat 463.547 kb on + strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 464.017 kb on + strandat 464.017 kb on + strandat 464.018 kb on - strandat 464.018 kb on - strandat 464.018 kb on - strandat 464.239 kb on - strand, within Psyr_0425at 464.239 kb on - strand, within Psyr_0425at 464.305 kb on + strand, within Psyr_0425at 464.495 kb on + strand, within Psyr_0425

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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461,795 + Psyr_0422 0.20 -1.1
461,795 + Psyr_0422 0.20 +0.8
461,795 + Psyr_0422 0.20 -0.8
461,796 - Psyr_0422 0.20 +0.9
461,796 - Psyr_0422 0.20 -1.6
461,796 - Psyr_0422 0.20 +0.9
461,796 - Psyr_0422 0.20 -0.7
461,796 - Psyr_0422 0.20 +0.2
461,796 - Psyr_0422 0.20 +0.3
461,796 - Psyr_0422 0.20 -0.5
461,884 + Psyr_0422 0.27 +1.1
462,013 + Psyr_0422 0.38 -1.4
462,014 - Psyr_0422 0.38 +0.4
462,014 - Psyr_0422 0.38 +0.1
462,158 - Psyr_0422 0.50 +0.2
462,250 + Psyr_0422 0.57 -1.3
462,250 + Psyr_0422 0.57 -0.5
462,250 + Psyr_0422 0.57 +0.2
462,250 + Psyr_0422 0.57 -0.3
462,250 + Psyr_0422 0.57 +0.2
462,251 - Psyr_0422 0.57 +0.7
462,251 - Psyr_0422 0.57 +0.1
462,281 + Psyr_0422 0.60 +0.5
462,329 + Psyr_0422 0.64 +0.2
462,329 + Psyr_0422 0.64 +1.5
462,329 + Psyr_0422 0.64 +1.8
462,329 + Psyr_0422 0.64 -1.1
462,330 - Psyr_0422 0.64 +0.5
462,330 - Psyr_0422 0.64 -0.1
462,370 + Psyr_0422 0.67 -0.9
462,370 + Psyr_0422 0.67 +1.0
462,370 + Psyr_0422 0.67 +1.1
462,370 + Psyr_0422 0.67 -0.1
462,371 - Psyr_0422 0.67 -0.1
462,371 - Psyr_0422 0.67 +1.2
462,371 - Psyr_0422 0.67 +0.2
462,371 - Psyr_0422 0.67 -1.1
462,371 - Psyr_0422 0.67 +0.1
462,636 - Psyr_0422 0.89 -1.4
462,816 + -0.6
462,816 + -1.8
462,816 + -0.6
462,816 + +0.8
462,816 + -0.0
462,817 - +1.0
462,817 - +0.1
462,817 - +0.9
462,817 - -0.0
462,817 - -1.9
462,817 - +0.6
462,817 - +1.0
462,817 - +0.4
462,817 - +0.6
463,022 - Psyr_0423 0.34 +0.0
463,044 + Psyr_0423 0.37 -0.6
463,044 + Psyr_0423 0.37 -1.7
463,045 - Psyr_0423 0.37 +0.7
463,112 - Psyr_0423 0.47 -0.4
463,153 + Psyr_0423 0.52 -1.4
463,155 + Psyr_0423 0.52 -0.8
463,155 + Psyr_0423 0.52 -0.4
463,155 + Psyr_0423 0.52 -0.1
463,155 + Psyr_0423 0.52 -1.1
463,155 + Psyr_0423 0.52 +0.7
463,155 + Psyr_0423 0.52 -0.3
463,156 - Psyr_0423 0.53 -0.7
463,156 - Psyr_0423 0.53 +1.6
463,156 - Psyr_0423 0.53 -0.7
463,156 - Psyr_0423 0.53 +2.2
463,156 - Psyr_0423 0.53 +0.7
463,156 - Psyr_0423 0.53 -0.5
463,156 - Psyr_0423 0.53 +0.2
463,156 - Psyr_0423 0.53 -0.7
463,156 - Psyr_0423 0.53 -1.0
463,258 - Psyr_0423 0.67 +1.6
463,260 + Psyr_0423 0.67 -0.1
463,261 - Psyr_0423 0.67 -0.6
463,523 + +0.5
463,547 + Psyr_0424 0.11 +0.3
463,548 - Psyr_0424 0.11 +0.4
463,548 - Psyr_0424 0.11 +0.5
463,549 + Psyr_0424 0.11 -1.4
463,549 + Psyr_0424 0.11 -0.1
463,549 + Psyr_0424 0.11 -0.1
463,549 + Psyr_0424 0.11 +1.0
463,549 + Psyr_0424 0.11 -0.1
463,549 + Psyr_0424 0.11 -0.6
463,549 + Psyr_0424 0.11 +0.2
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 +1.8
463,549 + Psyr_0424 0.11 +0.2
463,549 + Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 -0.1
463,549 + Psyr_0424 0.11 +0.2
463,549 + Psyr_0424 0.11 +0.9
463,549 + Psyr_0424 0.11 +1.1
463,549 + Psyr_0424 0.11 -0.4
463,549 + Psyr_0424 0.11 -0.8
463,549 + Psyr_0424 0.11 -1.4
463,549 + Psyr_0424 0.11 -0.3
463,549 + Psyr_0424 0.11 -0.5
463,549 + Psyr_0424 0.11 +1.2
463,549 + Psyr_0424 0.11 +0.5
463,550 - Psyr_0424 0.11 -1.0
463,550 - Psyr_0424 0.11 +0.5
463,550 - Psyr_0424 0.11 -0.7
463,550 - Psyr_0424 0.11 +0.9
463,550 - Psyr_0424 0.11 +0.2
463,550 - Psyr_0424 0.11 +1.4
463,550 - Psyr_0424 0.11 -1.1
463,550 - Psyr_0424 0.11 +0.6
463,550 - Psyr_0424 0.11 -0.5
463,550 - Psyr_0424 0.11 -0.1
463,550 - Psyr_0424 0.11 +0.2
463,550 - Psyr_0424 0.11 +1.1
463,550 - Psyr_0424 0.11 -0.3
463,550 - Psyr_0424 0.11 +0.2
463,550 - Psyr_0424 0.11 +0.3
463,550 - Psyr_0424 0.11 -0.4
463,550 - Psyr_0424 0.11 +1.9
463,550 - Psyr_0424 0.11 +0.8
464,017 + -0.7
464,017 + +0.3
464,018 - -1.1
464,018 - +0.7
464,018 - +0.1
464,239 - Psyr_0425 0.24 -0.1
464,239 - Psyr_0425 0.24 +0.8
464,305 + Psyr_0425 0.30 +1.3
464,495 + Psyr_0425 0.46 +0.2

Or see this region's nucleotide sequence