Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0338

Experiment: KB with Acriflavine 7.75 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0337 and Psyr_0338 are separated by 16 nucleotidesPsyr_0338 and Psyr_0339 are separated by 163 nucleotides Psyr_0337: Psyr_0337 - Taurine dioxygenase, at 359,311 to 360,207 _0337 Psyr_0338: Psyr_0338 - ABC transporter, at 360,224 to 361,099 _0338 Psyr_0339: Psyr_0339 - Binding-protein-dependent transport systems inner membrane component, at 361,263 to 362,198 _0339 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1 2at 359.659 kb on + strand, within Psyr_0337at 359.659 kb on + strand, within Psyr_0337at 359.660 kb on - strand, within Psyr_0337at 359.680 kb on + strand, within Psyr_0337at 359.680 kb on + strand, within Psyr_0337at 359.680 kb on + strand, within Psyr_0337at 359.680 kb on + strand, within Psyr_0337at 359.680 kb on + strand, within Psyr_0337at 359.681 kb on - strand, within Psyr_0337at 359.681 kb on - strand, within Psyr_0337at 359.681 kb on - strand, within Psyr_0337at 359.681 kb on - strand, within Psyr_0337at 359.681 kb on - strand, within Psyr_0337at 359.714 kb on - strand, within Psyr_0337at 359.833 kb on + strand, within Psyr_0337at 359.833 kb on + strand, within Psyr_0337at 359.834 kb on - strand, within Psyr_0337at 359.834 kb on - strand, within Psyr_0337at 359.845 kb on + strand, within Psyr_0337at 359.909 kb on + strand, within Psyr_0337at 359.910 kb on - strand, within Psyr_0337at 359.910 kb on - strand, within Psyr_0337at 359.910 kb on - strand, within Psyr_0337at 359.910 kb on - strand, within Psyr_0337at 360.043 kb on + strand, within Psyr_0337at 360.043 kb on + strand, within Psyr_0337at 360.043 kb on + strand, within Psyr_0337at 360.043 kb on + strand, within Psyr_0337at 360.044 kb on - strand, within Psyr_0337at 360.044 kb on - strand, within Psyr_0337at 360.044 kb on - strand, within Psyr_0337at 360.044 kb on - strand, within Psyr_0337at 360.074 kb on - strand, within Psyr_0337at 360.647 kb on + strand, within Psyr_0338at 360.647 kb on + strand, within Psyr_0338at 360.648 kb on - strand, within Psyr_0338at 360.940 kb on - strand, within Psyr_0338at 360.965 kb on + strand, within Psyr_0338at 360.965 kb on + strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 361.016 kb on - strandat 361.016 kb on - strandat 361.095 kb on - strandat 361.113 kb on + strandat 361.114 kb on - strandat 361.169 kb on + strandat 361.169 kb on + strandat 361.198 kb on + strandat 361.199 kb on - strandat 361.199 kb on - strandat 361.253 kb on + strandat 361.253 kb on + strandat 361.258 kb on - strandat 361.273 kb on + strandat 361.274 kb on - strandat 361.274 kb on - strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.277 kb on - strandat 361.277 kb on - strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.363 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.626 kb on + strand, within Psyr_0339at 361.747 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.839 kb on + strand, within Psyr_0339at 361.840 kb on - strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
remove
359,659 + Psyr_0337 0.39 -1.1
359,659 + Psyr_0337 0.39 +0.6
359,660 - Psyr_0337 0.39 -0.3
359,680 + Psyr_0337 0.41 +0.5
359,680 + Psyr_0337 0.41 -0.2
359,680 + Psyr_0337 0.41 -0.1
359,680 + Psyr_0337 0.41 +0.4
359,680 + Psyr_0337 0.41 -0.3
359,681 - Psyr_0337 0.41 +1.2
359,681 - Psyr_0337 0.41 -0.0
359,681 - Psyr_0337 0.41 +2.1
359,681 - Psyr_0337 0.41 -2.0
359,681 - Psyr_0337 0.41 -0.5
359,714 - Psyr_0337 0.45 -0.1
359,833 + Psyr_0337 0.58 +0.1
359,833 + Psyr_0337 0.58 -0.2
359,834 - Psyr_0337 0.58 +1.9
359,834 - Psyr_0337 0.58 -0.6
359,845 + Psyr_0337 0.60 +0.2
359,909 + Psyr_0337 0.67 -0.5
359,910 - Psyr_0337 0.67 -0.6
359,910 - Psyr_0337 0.67 -1.2
359,910 - Psyr_0337 0.67 -0.2
359,910 - Psyr_0337 0.67 -1.0
360,043 + Psyr_0337 0.82 -1.2
360,043 + Psyr_0337 0.82 -2.5
360,043 + Psyr_0337 0.82 +2.5
360,043 + Psyr_0337 0.82 +0.6
360,044 - Psyr_0337 0.82 -0.1
360,044 - Psyr_0337 0.82 -0.0
360,044 - Psyr_0337 0.82 +0.3
360,044 - Psyr_0337 0.82 -1.7
360,074 - Psyr_0337 0.85 -1.1
360,647 + Psyr_0338 0.48 -0.2
360,647 + Psyr_0338 0.48 -2.3
360,648 - Psyr_0338 0.48 -0.9
360,940 - Psyr_0338 0.82 -0.2
360,965 + Psyr_0338 0.85 +0.9
360,965 + Psyr_0338 0.85 +0.1
360,966 - Psyr_0338 0.85 -0.7
360,966 - Psyr_0338 0.85 -1.1
360,966 - Psyr_0338 0.85 -1.2
361,016 - -0.5
361,016 - -0.3
361,095 - +0.4
361,113 + +0.7
361,114 - +0.2
361,169 + -0.1
361,169 + +0.1
361,198 + +0.5
361,199 - -0.3
361,199 - +0.2
361,253 + -0.1
361,253 + -1.1
361,258 - -1.2
361,273 + -0.6
361,274 - -0.5
361,274 - -0.2
361,276 + -1.1
361,276 + -0.6
361,276 + -0.7
361,277 - +0.4
361,277 - -0.2
361,298 + -0.3
361,298 + -1.5
361,298 + -1.6
361,298 + -1.7
361,298 + +0.3
361,300 + +0.2
361,300 + +0.9
361,300 + +0.9
361,363 - Psyr_0339 0.11 +0.9
361,558 - Psyr_0339 0.32 +0.3
361,558 - Psyr_0339 0.32 +0.1
361,626 + Psyr_0339 0.39 +0.5
361,747 + Psyr_0339 0.52 -0.2
361,835 + Psyr_0339 0.61 -0.5
361,835 + Psyr_0339 0.61 -0.9
361,836 - Psyr_0339 0.61 +0.7
361,836 - Psyr_0339 0.61 +0.9
361,836 - Psyr_0339 0.61 +0.2
361,836 - Psyr_0339 0.61 -0.9
361,839 + Psyr_0339 0.62 -1.7
361,840 - Psyr_0339 0.62 -0.9
361,890 + Psyr_0339 0.67 -1.1
361,890 + Psyr_0339 0.67 +0.2
361,890 + Psyr_0339 0.67 -1.3
361,890 + Psyr_0339 0.67 +0.7
361,890 + Psyr_0339 0.67 -0.1
361,890 + Psyr_0339 0.67 +0.3
361,890 + Psyr_0339 0.67 +0.9
361,890 + Psyr_0339 0.67 +0.5
361,890 + Psyr_0339 0.67 -2.5
361,890 + Psyr_0339 0.67 -0.1
361,890 + Psyr_0339 0.67 +0.1
361,890 + Psyr_0339 0.67 +1.1
361,890 + Psyr_0339 0.67 +0.2
361,890 + Psyr_0339 0.67 -1.2
361,891 - Psyr_0339 0.67 +0.6
361,891 - Psyr_0339 0.67 +0.2
361,891 - Psyr_0339 0.67 +1.2
361,891 - Psyr_0339 0.67 +0.4
361,891 - Psyr_0339 0.67 +0.5
361,891 - Psyr_0339 0.67 -0.9
361,891 - Psyr_0339 0.67 -0.4
361,891 - Psyr_0339 0.67 +1.2
362,052 + Psyr_0339 0.84 -1.1
362,052 + Psyr_0339 0.84 -1.3
362,052 + Psyr_0339 0.84 -0.5
362,052 + Psyr_0339 0.84 -0.8
362,052 + Psyr_0339 0.84 -0.4
362,053 - Psyr_0339 0.84 -0.9
362,053 - Psyr_0339 0.84 -0.3
362,053 - Psyr_0339 0.84 -0.4
362,053 - Psyr_0339 0.84 -0.5
362,079 + Psyr_0339 0.87 -0.8
362,079 + Psyr_0339 0.87 +0.9
362,079 + Psyr_0339 0.87 -0.7
362,079 + Psyr_0339 0.87 +0.9
362,079 + Psyr_0339 0.87 +0.5
362,079 + Psyr_0339 0.87 +0.1
362,079 + Psyr_0339 0.87 +0.3
362,079 + Psyr_0339 0.87 -0.2
362,080 - Psyr_0339 0.87 +0.7
362,080 - Psyr_0339 0.87 -1.9
362,080 - Psyr_0339 0.87 +1.3
362,080 - Psyr_0339 0.87 +0.6
362,080 - Psyr_0339 0.87 +0.6
362,080 - Psyr_0339 0.87 -0.5
362,080 - Psyr_0339 0.87 +0.9

Or see this region's nucleotide sequence