Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0336 and Psyr_0337 are separated by 328 nucleotides Psyr_0337 and Psyr_0338 are separated by 16 nucleotides
Psyr_0336: Psyr_0336 - Outer membrane autotransporter barrel, at 355,995 to 358,982
_0336
Psyr_0337: Psyr_0337 - Taurine dioxygenase, at 359,311 to 360,207
_0337
Psyr_0338: Psyr_0338 - ABC transporter, at 360,224 to 361,099
_0338
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.432 kb on + strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.582 kb on + strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.693 kb on + strand at 358.693 kb on + strand at 358.727 kb on + strand at 358.727 kb on + strand at 358.728 kb on - strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.758 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.798 kb on + strand at 358.798 kb on + strand at 358.799 kb on - strand at 358.799 kb on - strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 359.046 kb on + strand at 359.047 kb on - strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.118 kb on + strand at 359.146 kb on + strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.191 kb on + strand at 359.192 kb on - strand at 359.659 kb on + strand, within Psyr_0337 at 359.659 kb on + strand, within Psyr_0337 at 359.660 kb on - strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.714 kb on - strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.845 kb on + strand, within Psyr_0337 at 359.909 kb on + strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.074 kb on - strand, within Psyr_0337 at 360.647 kb on + strand, within Psyr_0338 at 360.647 kb on + strand, within Psyr_0338 at 360.648 kb on - strand, within Psyr_0338 at 360.940 kb on - strand, within Psyr_0338 at 360.965 kb on + strand, within Psyr_0338 at 360.965 kb on + strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 361.016 kb on - strand at 361.016 kb on - strand at 361.095 kb on - strand at 361.113 kb on + strand at 361.114 kb on - strand at 361.169 kb on + strand at 361.169 kb on + strand at 361.198 kb on + strand at 361.199 kb on - strand at 361.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 358,432 + Psyr_0336 0.82 +0.7 358,433 - Psyr_0336 0.82 +0.5 358,433 - Psyr_0336 0.82 -0.3 358,433 - Psyr_0336 0.82 -0.8 358,444 + Psyr_0336 0.82 -0.4 358,444 + Psyr_0336 0.82 +0.4 358,445 - Psyr_0336 0.82 +1.4 358,445 - Psyr_0336 0.82 -1.1 358,445 - Psyr_0336 0.82 +1.0 358,582 + Psyr_0336 0.87 -0.8 358,583 - Psyr_0336 0.87 -1.4 358,583 - Psyr_0336 0.87 +0.1 358,583 - Psyr_0336 0.87 -1.2 358,693 + +0.5 358,693 + -0.4 358,727 + +0.4 358,727 + -1.3 358,728 - -0.8 358,757 + -1.9 358,757 + +1.4 358,757 + +1.5 358,757 + -1.3 358,757 + +0.5 358,758 - +0.3 358,758 - -0.5 358,759 + -0.0 358,759 + -1.0 358,759 + -0.7 358,759 + +0.5 358,760 - -0.7 358,760 - -1.1 358,760 - +0.1 358,760 - +0.5 358,760 - +0.7 358,760 - -0.3 358,760 - +0.2 358,760 - -0.3 358,760 - +0.4 358,798 + +0.4 358,798 + -0.0 358,799 - -0.5 358,799 - +0.5 358,991 + -0.5 358,991 + +0.1 358,991 + +1.6 358,991 + -1.6 358,991 + +0.3 358,992 - +0.2 358,992 - +0.5 358,992 - -1.0 358,992 - -1.4 359,046 + -0.0 359,047 - +0.2 359,064 + -1.3 359,064 + +0.2 359,064 + +0.0 359,064 + +0.7 359,064 + -1.1 359,064 + -0.8 359,064 + +1.0 359,064 + -0.7 359,064 + +0.4 359,064 + -0.8 359,065 - -0.4 359,065 - +1.1 359,065 - -0.5 359,065 - +2.5 359,065 - +0.3 359,065 - -0.7 359,065 - -0.6 359,065 - +0.4 359,065 - -0.1 359,065 - +0.6 359,065 - -0.2 359,065 - +0.2 359,065 - +0.6 359,065 - +0.0 359,065 - -0.5 359,065 - +0.9 359,065 - +0.3 359,065 - +0.1 359,065 - -2.1 359,065 - -2.1 359,118 + -0.5 359,146 + +2.0 359,147 - +0.1 359,147 - +0.9 359,147 - +0.3 359,158 + -0.5 359,158 + +1.2 359,158 + -0.1 359,158 + -0.1 359,158 + -0.0 359,158 + -0.6 359,158 + +0.6 359,158 + -0.9 359,159 - +0.3 359,159 - +0.2 359,159 - +1.1 359,159 - +0.4 359,159 - +0.7 359,159 - +0.0 359,159 - +0.2 359,159 - +0.3 359,159 - -0.7 359,176 + +1.9 359,176 + -0.0 359,176 + -0.3 359,176 + -1.5 359,176 + +0.7 359,176 + +0.2 359,176 + +0.4 359,176 + -0.4 359,177 - -1.2 359,177 - -0.4 359,177 - +0.3 359,177 - +0.6 359,191 + +0.4 359,192 - +0.3 359,659 + Psyr_0337 0.39 -1.1 359,659 + Psyr_0337 0.39 +0.6 359,660 - Psyr_0337 0.39 -0.3 359,680 + Psyr_0337 0.41 +0.5 359,680 + Psyr_0337 0.41 -0.2 359,680 + Psyr_0337 0.41 -0.1 359,680 + Psyr_0337 0.41 +0.4 359,680 + Psyr_0337 0.41 -0.3 359,681 - Psyr_0337 0.41 +1.2 359,681 - Psyr_0337 0.41 -0.0 359,681 - Psyr_0337 0.41 +2.1 359,681 - Psyr_0337 0.41 -2.0 359,681 - Psyr_0337 0.41 -0.5 359,714 - Psyr_0337 0.45 -0.1 359,833 + Psyr_0337 0.58 +0.1 359,833 + Psyr_0337 0.58 -0.2 359,834 - Psyr_0337 0.58 +1.9 359,834 - Psyr_0337 0.58 -0.6 359,845 + Psyr_0337 0.60 +0.2 359,909 + Psyr_0337 0.67 -0.5 359,910 - Psyr_0337 0.67 -0.6 359,910 - Psyr_0337 0.67 -1.2 359,910 - Psyr_0337 0.67 -0.2 359,910 - Psyr_0337 0.67 -1.0 360,043 + Psyr_0337 0.82 -1.2 360,043 + Psyr_0337 0.82 -2.5 360,043 + Psyr_0337 0.82 +2.5 360,043 + Psyr_0337 0.82 +0.6 360,044 - Psyr_0337 0.82 -0.1 360,044 - Psyr_0337 0.82 -0.0 360,044 - Psyr_0337 0.82 +0.3 360,044 - Psyr_0337 0.82 -1.7 360,074 - Psyr_0337 0.85 -1.1 360,647 + Psyr_0338 0.48 -0.2 360,647 + Psyr_0338 0.48 -2.3 360,648 - Psyr_0338 0.48 -0.9 360,940 - Psyr_0338 0.82 -0.2 360,965 + Psyr_0338 0.85 +0.9 360,965 + Psyr_0338 0.85 +0.1 360,966 - Psyr_0338 0.85 -0.7 360,966 - Psyr_0338 0.85 -1.1 360,966 - Psyr_0338 0.85 -1.2 361,016 - -0.5 361,016 - -0.3 361,095 - +0.4 361,113 + +0.7 361,114 - +0.2 361,169 + -0.1 361,169 + +0.1 361,198 + +0.5 361,199 - -0.3 361,199 - +0.2
Or see this region's nucleotide sequence