Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0083

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0081 and Psyr_0082 are separated by 2 nucleotidesPsyr_0082 and Psyr_0083 are separated by 13 nucleotidesPsyr_0083 and Psyr_0084 are separated by 94 nucleotides Psyr_0081: Psyr_0081 - ABC transporter, at 87,481 to 88,461 _0081 Psyr_0082: Psyr_0082 - Binding-protein-dependent transport systems inner membrane component, at 88,464 to 89,336 _0082 Psyr_0083: Psyr_0083 - Binding-protein-dependent transport systems inner membrane component, at 89,350 to 90,171 _0083 Psyr_0084: Psyr_0084 - extracellular solute-binding protein, family 1, at 90,266 to 91,276 _0084 Position (kb) 89 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 88.465 kb on + strandat 88.465 kb on + strandat 88.466 kb on - strandat 88.482 kb on - strandat 88.588 kb on + strand, within Psyr_0082at 88.588 kb on + strand, within Psyr_0082at 88.589 kb on - strand, within Psyr_0082at 88.589 kb on - strand, within Psyr_0082at 88.589 kb on - strand, within Psyr_0082at 88.589 kb on - strand, within Psyr_0082at 88.695 kb on - strand, within Psyr_0082at 88.712 kb on - strand, within Psyr_0082at 88.963 kb on + strand, within Psyr_0082at 88.963 kb on + strand, within Psyr_0082at 88.963 kb on + strand, within Psyr_0082at 88.964 kb on - strand, within Psyr_0082at 88.964 kb on - strand, within Psyr_0082at 88.964 kb on - strand, within Psyr_0082at 88.964 kb on - strand, within Psyr_0082at 89.044 kb on + strand, within Psyr_0082at 89.044 kb on + strand, within Psyr_0082at 89.045 kb on - strand, within Psyr_0082at 89.045 kb on - strand, within Psyr_0082at 89.239 kb on - strand, within Psyr_0082at 89.329 kb on + strandat 89.329 kb on + strandat 89.329 kb on + strandat 89.329 kb on + strandat 89.330 kb on - strandat 89.330 kb on - strandat 89.330 kb on - strandat 89.450 kb on + strand, within Psyr_0083at 89.450 kb on + strand, within Psyr_0083at 89.451 kb on - strand, within Psyr_0083at 89.451 kb on - strand, within Psyr_0083at 89.819 kb on + strand, within Psyr_0083at 89.819 kb on + strand, within Psyr_0083at 89.820 kb on - strand, within Psyr_0083at 89.913 kb on - strand, within Psyr_0083at 89.970 kb on - strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.064 kb on + strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.065 kb on - strand, within Psyr_0083at 90.085 kb on + strand, within Psyr_0083at 90.085 kb on + strand, within Psyr_0083at 90.088 kb on + strand, within Psyr_0083at 90.088 kb on + strand, within Psyr_0083at 90.089 kb on - strandat 90.107 kb on + strandat 90.107 kb on + strandat 90.107 kb on + strandat 90.108 kb on - strandat 90.108 kb on - strandat 90.108 kb on - strandat 90.108 kb on - strandat 90.119 kb on + strandat 90.119 kb on + strandat 90.159 kb on + strandat 90.160 kb on - strandat 90.171 kb on + strandat 90.171 kb on + strandat 90.172 kb on - strandat 90.172 kb on - strandat 90.172 kb on - strandat 90.172 kb on - strandat 90.267 kb on + strandat 90.279 kb on + strandat 90.279 kb on + strandat 90.279 kb on + strandat 90.390 kb on + strand, within Psyr_0084at 90.391 kb on - strand, within Psyr_0084at 90.424 kb on - strand, within Psyr_0084at 90.463 kb on - strand, within Psyr_0084at 90.728 kb on + strand, within Psyr_0084at 90.728 kb on + strand, within Psyr_0084at 90.728 kb on + strand, within Psyr_0084at 90.728 kb on + strand, within Psyr_0084at 90.728 kb on + strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.729 kb on - strand, within Psyr_0084at 90.732 kb on + strand, within Psyr_0084at 90.732 kb on + strand, within Psyr_0084at 90.732 kb on + strand, within Psyr_0084at 90.732 kb on + strand, within Psyr_0084at 90.732 kb on + strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.733 kb on - strand, within Psyr_0084at 90.927 kb on + strand, within Psyr_0084at 90.927 kb on + strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 90.928 kb on - strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.152 kb on + strand, within Psyr_0084at 91.153 kb on - strand, within Psyr_0084at 91.161 kb on + strand, within Psyr_0084at 91.161 kb on + strand, within Psyr_0084at 91.162 kb on - strand, within Psyr_0084at 91.162 kb on - strand, within Psyr_0084

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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88,465 + +0.3
88,465 + +0.4
88,466 - +0.6
88,482 - -0.0
88,588 + Psyr_0082 0.14 +0.6
88,588 + Psyr_0082 0.14 +0.9
88,589 - Psyr_0082 0.14 -0.7
88,589 - Psyr_0082 0.14 -0.2
88,589 - Psyr_0082 0.14 -2.4
88,589 - Psyr_0082 0.14 +0.8
88,695 - Psyr_0082 0.26 -0.7
88,712 - Psyr_0082 0.28 -3.9
88,963 + Psyr_0082 0.57 +1.1
88,963 + Psyr_0082 0.57 -0.6
88,963 + Psyr_0082 0.57 -1.3
88,964 - Psyr_0082 0.57 +0.4
88,964 - Psyr_0082 0.57 -0.4
88,964 - Psyr_0082 0.57 +1.3
88,964 - Psyr_0082 0.57 +0.7
89,044 + Psyr_0082 0.66 +0.2
89,044 + Psyr_0082 0.66 +0.1
89,045 - Psyr_0082 0.67 +1.4
89,045 - Psyr_0082 0.67 -0.7
89,239 - Psyr_0082 0.89 +0.7
89,329 + +0.2
89,329 + +0.7
89,329 + +1.1
89,329 + -1.0
89,330 - +0.2
89,330 - -0.1
89,330 - +0.4
89,450 + Psyr_0083 0.12 +1.4
89,450 + Psyr_0083 0.12 +0.1
89,451 - Psyr_0083 0.12 +0.0
89,451 - Psyr_0083 0.12 +1.8
89,819 + Psyr_0083 0.57 +0.5
89,819 + Psyr_0083 0.57 -0.2
89,820 - Psyr_0083 0.57 +0.6
89,913 - Psyr_0083 0.68 -0.4
89,970 - Psyr_0083 0.75 -0.3
90,064 + Psyr_0083 0.87 +0.3
90,064 + Psyr_0083 0.87 +1.6
90,064 + Psyr_0083 0.87 +1.0
90,064 + Psyr_0083 0.87 +0.0
90,064 + Psyr_0083 0.87 +1.0
90,064 + Psyr_0083 0.87 +0.7
90,064 + Psyr_0083 0.87 -0.5
90,064 + Psyr_0083 0.87 +0.8
90,064 + Psyr_0083 0.87 -0.9
90,064 + Psyr_0083 0.87 -0.6
90,065 - Psyr_0083 0.87 -0.2
90,065 - Psyr_0083 0.87 -0.1
90,065 - Psyr_0083 0.87 -0.6
90,065 - Psyr_0083 0.87 +0.7
90,065 - Psyr_0083 0.87 +1.1
90,065 - Psyr_0083 0.87 +0.4
90,065 - Psyr_0083 0.87 -2.6
90,085 + Psyr_0083 0.89 +0.2
90,085 + Psyr_0083 0.89 -0.9
90,088 + Psyr_0083 0.90 -0.2
90,088 + Psyr_0083 0.90 +2.1
90,089 - +0.5
90,107 + -0.9
90,107 + +0.2
90,107 + -2.2
90,108 - +0.6
90,108 - -0.1
90,108 - +0.6
90,108 - +0.2
90,119 + +1.3
90,119 + +1.4
90,159 + +1.0
90,160 - -0.2
90,171 + -0.4
90,171 + -1.2
90,172 - +0.5
90,172 - +0.4
90,172 - -0.1
90,172 - -1.3
90,267 + -0.2
90,279 + -2.0
90,279 + +0.1
90,279 + -0.2
90,390 + Psyr_0084 0.12 -0.3
90,391 - Psyr_0084 0.12 -0.7
90,424 - Psyr_0084 0.16 +0.7
90,463 - Psyr_0084 0.19 +1.3
90,728 + Psyr_0084 0.46 +0.8
90,728 + Psyr_0084 0.46 +0.0
90,728 + Psyr_0084 0.46 -0.5
90,728 + Psyr_0084 0.46 -0.3
90,728 + Psyr_0084 0.46 -1.7
90,729 - Psyr_0084 0.46 +1.1
90,729 - Psyr_0084 0.46 +0.6
90,729 - Psyr_0084 0.46 +0.5
90,729 - Psyr_0084 0.46 -1.3
90,729 - Psyr_0084 0.46 +0.2
90,729 - Psyr_0084 0.46 +0.5
90,729 - Psyr_0084 0.46 -0.0
90,729 - Psyr_0084 0.46 -1.1
90,729 - Psyr_0084 0.46 -0.3
90,732 + Psyr_0084 0.46 +0.8
90,732 + Psyr_0084 0.46 +0.4
90,732 + Psyr_0084 0.46 -0.6
90,732 + Psyr_0084 0.46 -0.7
90,732 + Psyr_0084 0.46 +0.2
90,733 - Psyr_0084 0.46 +1.5
90,733 - Psyr_0084 0.46 -1.3
90,733 - Psyr_0084 0.46 -1.5
90,733 - Psyr_0084 0.46 +0.8
90,733 - Psyr_0084 0.46 +0.3
90,733 - Psyr_0084 0.46 -1.7
90,927 + Psyr_0084 0.65 -0.2
90,927 + Psyr_0084 0.65 -1.7
90,928 - Psyr_0084 0.65 +1.3
90,928 - Psyr_0084 0.65 +0.5
90,928 - Psyr_0084 0.65 +2.5
90,928 - Psyr_0084 0.65 -1.2
90,928 - Psyr_0084 0.65 -0.7
90,928 - Psyr_0084 0.65 -0.6
91,152 + Psyr_0084 0.88 -1.7
91,152 + Psyr_0084 0.88 +0.9
91,152 + Psyr_0084 0.88 +0.4
91,152 + Psyr_0084 0.88 +0.5
91,152 + Psyr_0084 0.88 +0.0
91,152 + Psyr_0084 0.88 -0.2
91,153 - Psyr_0084 0.88 +0.5
91,161 + Psyr_0084 0.89 +0.6
91,161 + Psyr_0084 0.89 +0.2
91,162 - Psyr_0084 0.89 +0.4
91,162 - Psyr_0084 0.89 +0.5

Or see this region's nucleotide sequence