Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_837

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_836 and Pf6N2E2_837 are separated by 7 nucleotidesPf6N2E2_837 and Pf6N2E2_838 are separated by 1 nucleotides Pf6N2E2_836 - ABC-type protease/lipase transport system, ATPase and permease components, at 977,661 to 979,376 _836 Pf6N2E2_837 - HlyD family secretion protein, at 979,384 to 980,706 _837 Pf6N2E2_838 - Type I secretion outer membrane protein, TolC precursor, at 980,708 to 982,015 _838 Position (kb) 979 980 981Strain fitness (log2 ratio) -2 -1 0 1 2at 978.442 kb on - strand, within Pf6N2E2_836at 978.442 kb on - strand, within Pf6N2E2_836at 978.442 kb on - strand, within Pf6N2E2_836at 978.571 kb on - strand, within Pf6N2E2_836at 978.571 kb on - strand, within Pf6N2E2_836at 978.823 kb on + strand, within Pf6N2E2_836at 978.876 kb on + strand, within Pf6N2E2_836at 978.877 kb on - strand, within Pf6N2E2_836at 979.026 kb on + strand, within Pf6N2E2_836at 979.104 kb on + strand, within Pf6N2E2_836at 979.104 kb on + strand, within Pf6N2E2_836at 979.375 kb on - strandat 979.966 kb on + strand, within Pf6N2E2_837at 979.967 kb on - strand, within Pf6N2E2_837at 979.967 kb on - strand, within Pf6N2E2_837at 979.979 kb on + strand, within Pf6N2E2_837at 980.012 kb on - strand, within Pf6N2E2_837at 980.012 kb on - strand, within Pf6N2E2_837at 980.072 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.204 kb on - strand, within Pf6N2E2_837at 980.204 kb on - strand, within Pf6N2E2_837at 980.257 kb on - strand, within Pf6N2E2_837at 980.457 kb on + strand, within Pf6N2E2_837at 980.458 kb on - strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.536 kb on + strand, within Pf6N2E2_837at 980.537 kb on - strand, within Pf6N2E2_837at 980.537 kb on - strand, within Pf6N2E2_837at 980.653 kb on + strandat 980.767 kb on + strandat 980.767 kb on + strandat 980.768 kb on - strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.886 kb on + strand, within Pf6N2E2_838at 980.886 kb on + strand, within Pf6N2E2_838at 980.886 kb on + strand, within Pf6N2E2_838at 980.999 kb on + strand, within Pf6N2E2_838at 980.999 kb on + strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.023 kb on + strand, within Pf6N2E2_838at 981.032 kb on + strand, within Pf6N2E2_838at 981.032 kb on + strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.110 kb on + strand, within Pf6N2E2_838at 981.408 kb on - strand, within Pf6N2E2_838at 981.623 kb on + strand, within Pf6N2E2_838

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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978,442 - Pf6N2E2_836 0.46 +0.2
978,442 - Pf6N2E2_836 0.46 +0.5
978,442 - Pf6N2E2_836 0.46 -0.6
978,571 - Pf6N2E2_836 0.53 +0.4
978,571 - Pf6N2E2_836 0.53 +0.2
978,823 + Pf6N2E2_836 0.68 +0.4
978,876 + Pf6N2E2_836 0.71 +1.9
978,877 - Pf6N2E2_836 0.71 -0.8
979,026 + Pf6N2E2_836 0.80 -0.8
979,104 + Pf6N2E2_836 0.84 -1.0
979,104 + Pf6N2E2_836 0.84 -0.1
979,375 - -0.6
979,966 + Pf6N2E2_837 0.44 -0.3
979,967 - Pf6N2E2_837 0.44 +0.0
979,967 - Pf6N2E2_837 0.44 -0.6
979,979 + Pf6N2E2_837 0.45 -0.6
980,012 - Pf6N2E2_837 0.47 -0.5
980,012 - Pf6N2E2_837 0.47 +1.0
980,072 + Pf6N2E2_837 0.52 +1.2
980,203 + Pf6N2E2_837 0.62 +0.4
980,203 + Pf6N2E2_837 0.62 +0.4
980,203 + Pf6N2E2_837 0.62 +0.7
980,203 + Pf6N2E2_837 0.62 -0.1
980,203 + Pf6N2E2_837 0.62 -0.0
980,204 - Pf6N2E2_837 0.62 -0.8
980,204 - Pf6N2E2_837 0.62 +0.2
980,257 - Pf6N2E2_837 0.66 +0.3
980,457 + Pf6N2E2_837 0.81 -2.2
980,458 - Pf6N2E2_837 0.81 +1.6
980,533 + Pf6N2E2_837 0.87 +0.3
980,533 + Pf6N2E2_837 0.87 +0.1
980,533 + Pf6N2E2_837 0.87 +0.4
980,533 + Pf6N2E2_837 0.87 +0.9
980,534 - Pf6N2E2_837 0.87 -0.4
980,534 - Pf6N2E2_837 0.87 -1.1
980,534 - Pf6N2E2_837 0.87 -1.3
980,536 + Pf6N2E2_837 0.87 +0.4
980,537 - Pf6N2E2_837 0.87 +0.3
980,537 - Pf6N2E2_837 0.87 -0.3
980,653 + -0.5
980,767 + +0.0
980,767 + +0.1
980,768 - +0.2
980,771 + +0.2
980,771 + -0.1
980,771 + -1.8
980,771 + -1.3
980,771 + +0.9
980,771 + +1.9
980,771 + +0.2
980,771 + +0.5
980,771 + +1.2
980,771 + +0.5
980,771 + +0.4
980,771 + +0.4
980,772 - +0.3
980,772 - +0.4
980,772 - -0.2
980,772 - -0.6
980,772 - +0.1
980,772 - -0.1
980,772 - +0.1
980,772 - -1.6
980,886 + Pf6N2E2_838 0.14 -1.6
980,886 + Pf6N2E2_838 0.14 +0.2
980,886 + Pf6N2E2_838 0.14 +0.1
980,999 + Pf6N2E2_838 0.22 +1.5
980,999 + Pf6N2E2_838 0.22 +0.7
981,000 - Pf6N2E2_838 0.22 -0.2
981,000 - Pf6N2E2_838 0.22 +0.2
981,000 - Pf6N2E2_838 0.22 +1.0
981,000 - Pf6N2E2_838 0.22 -0.5
981,000 - Pf6N2E2_838 0.22 -0.7
981,000 - Pf6N2E2_838 0.22 +0.8
981,023 + Pf6N2E2_838 0.24 +0.3
981,032 + Pf6N2E2_838 0.25 +0.5
981,032 + Pf6N2E2_838 0.25 -0.1
981,033 - Pf6N2E2_838 0.25 +0.7
981,033 - Pf6N2E2_838 0.25 +0.2
981,033 - Pf6N2E2_838 0.25 -0.1
981,110 + Pf6N2E2_838 0.31 -1.0
981,408 - Pf6N2E2_838 0.54 +0.3
981,623 + Pf6N2E2_838 0.70 +0.3

Or see this region's nucleotide sequence