Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_662

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_661 and Pf1N1B4_662 are separated by 276 nucleotidesPf1N1B4_662 and Pf1N1B4_663 overlap by 4 nucleotides Pf1N1B4_661 - glycosyl transferase, group 1 family protein, at 758,912 to 760,033 _661 Pf1N1B4_662 - FIG00955875: hypothetical protein, at 760,310 to 760,801 _662 Pf1N1B4_663 - FIG00955324: hypothetical protein, at 760,798 to 761,793 _663 Position (kb) 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 759.326 kb on + strand, within Pf1N1B4_661at 759.326 kb on + strand, within Pf1N1B4_661at 759.326 kb on + strand, within Pf1N1B4_661at 759.327 kb on - strandat 759.327 kb on - strand, within Pf1N1B4_661at 759.327 kb on - strand, within Pf1N1B4_661at 759.327 kb on - strand, within Pf1N1B4_661at 759.327 kb on - strand, within Pf1N1B4_661at 759.327 kb on - strand, within Pf1N1B4_661at 759.327 kb on - strand, within Pf1N1B4_661at 759.341 kb on + strand, within Pf1N1B4_661at 759.341 kb on + strand, within Pf1N1B4_661at 759.342 kb on - strand, within Pf1N1B4_661at 759.342 kb on - strand, within Pf1N1B4_661at 759.342 kb on - strand, within Pf1N1B4_661at 759.342 kb on - strand, within Pf1N1B4_661at 759.343 kb on + strand, within Pf1N1B4_661at 759.343 kb on + strand, within Pf1N1B4_661at 759.343 kb on + strand, within Pf1N1B4_661at 759.343 kb on + strand, within Pf1N1B4_661at 759.344 kb on - strand, within Pf1N1B4_661at 759.344 kb on - strand, within Pf1N1B4_661at 759.389 kb on - strand, within Pf1N1B4_661at 759.424 kb on - strand, within Pf1N1B4_661at 759.508 kb on + strand, within Pf1N1B4_661at 759.509 kb on - strand, within Pf1N1B4_661at 759.607 kb on - strandat 759.947 kb on + strandat 759.947 kb on + strandat 759.947 kb on + strandat 759.948 kb on - strandat 759.948 kb on - strandat 759.987 kb on - strandat 760.178 kb on + strandat 760.178 kb on + strandat 760.179 kb on - strandat 760.260 kb on + strandat 760.323 kb on - strandat 760.323 kb on - strandat 760.323 kb on - strandat 760.343 kb on + strandat 760.407 kb on - strand, within Pf1N1B4_662at 760.407 kb on - strand, within Pf1N1B4_662at 760.408 kb on + strand, within Pf1N1B4_662at 760.408 kb on + strand, within Pf1N1B4_662at 760.408 kb on + strand, within Pf1N1B4_662at 760.408 kb on + strand, within Pf1N1B4_662at 760.409 kb on - strandat 760.409 kb on - strand, within Pf1N1B4_662at 760.409 kb on - strand, within Pf1N1B4_662at 760.409 kb on - strandat 760.409 kb on - strand, within Pf1N1B4_662at 761.135 kb on + strand, within Pf1N1B4_663at 761.200 kb on + strand, within Pf1N1B4_663at 761.200 kb on + strand, within Pf1N1B4_663at 761.200 kb on + strand, within Pf1N1B4_663at 761.200 kb on + strand, within Pf1N1B4_663at 761.200 kb on + strand, within Pf1N1B4_663at 761.201 kb on - strand, within Pf1N1B4_663at 761.201 kb on - strand, within Pf1N1B4_663at 761.288 kb on + strand, within Pf1N1B4_663at 761.303 kb on - strand, within Pf1N1B4_663at 761.500 kb on + strand, within Pf1N1B4_663at 761.500 kb on + strand, within Pf1N1B4_663at 761.647 kb on - strand, within Pf1N1B4_663at 761.701 kb on + strandat 761.701 kb on + strandat 761.701 kb on + strandat 761.701 kb on + strandat 761.701 kb on + strandat 761.702 kb on - strandat 761.704 kb on + strandat 761.704 kb on + strandat 761.704 kb on + strandat 761.704 kb on + strandat 761.705 kb on - strandat 761.705 kb on - strandat 761.705 kb on - strandat 761.710 kb on + strandat 761.710 kb on + strandat 761.710 kb on + strandat 761.710 kb on + strandat 761.711 kb on - strandat 761.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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759,326 + Pf1N1B4_661 0.37 +0.2
759,326 + Pf1N1B4_661 0.37 +0.4
759,326 + Pf1N1B4_661 0.37 -0.3
759,327 - +0.1
759,327 - Pf1N1B4_661 0.37 +0.8
759,327 - Pf1N1B4_661 0.37 -0.9
759,327 - Pf1N1B4_661 0.37 -0.7
759,327 - Pf1N1B4_661 0.37 -0.6
759,327 - Pf1N1B4_661 0.37 +0.4
759,327 - Pf1N1B4_661 0.37 -0.9
759,341 + Pf1N1B4_661 0.38 +1.1
759,341 + Pf1N1B4_661 0.38 +0.8
759,342 - Pf1N1B4_661 0.38 +1.5
759,342 - Pf1N1B4_661 0.38 +1.1
759,342 - Pf1N1B4_661 0.38 -1.2
759,342 - Pf1N1B4_661 0.38 -2.2
759,343 + Pf1N1B4_661 0.38 +0.2
759,343 + Pf1N1B4_661 0.38 +0.1
759,343 + Pf1N1B4_661 0.38 +1.8
759,343 + Pf1N1B4_661 0.38 +1.4
759,344 - Pf1N1B4_661 0.39 +1.0
759,344 - Pf1N1B4_661 0.39 -0.2
759,389 - Pf1N1B4_661 0.43 -0.1
759,424 - Pf1N1B4_661 0.46 +0.2
759,508 + Pf1N1B4_661 0.53 -0.3
759,509 - Pf1N1B4_661 0.53 +0.1
759,607 - +0.5
759,947 + +0.2
759,947 + -1.1
759,947 + -0.9
759,948 - -0.5
759,948 - +0.1
759,987 - -0.0
760,178 + -2.2
760,178 + -1.5
760,179 - +0.8
760,260 + +0.3
760,323 - -0.5
760,323 - +0.2
760,323 - +0.2
760,343 + -0.1
760,407 - Pf1N1B4_662 0.20 +0.2
760,407 - Pf1N1B4_662 0.20 -0.6
760,408 + Pf1N1B4_662 0.20 -0.2
760,408 + Pf1N1B4_662 0.20 -0.6
760,408 + Pf1N1B4_662 0.20 -0.7
760,408 + Pf1N1B4_662 0.20 +0.1
760,409 - +2.7
760,409 - Pf1N1B4_662 0.20 -1.6
760,409 - Pf1N1B4_662 0.20 -1.9
760,409 - -0.7
760,409 - Pf1N1B4_662 0.20 -0.1
761,135 + Pf1N1B4_663 0.34 -1.4
761,200 + Pf1N1B4_663 0.40 -0.9
761,200 + Pf1N1B4_663 0.40 -0.1
761,200 + Pf1N1B4_663 0.40 -2.4
761,200 + Pf1N1B4_663 0.40 -0.4
761,200 + Pf1N1B4_663 0.40 +0.8
761,201 - Pf1N1B4_663 0.40 -1.7
761,201 - Pf1N1B4_663 0.40 -0.5
761,288 + Pf1N1B4_663 0.49 +0.8
761,303 - Pf1N1B4_663 0.51 +0.8
761,500 + Pf1N1B4_663 0.70 -0.7
761,500 + Pf1N1B4_663 0.70 -0.5
761,647 - Pf1N1B4_663 0.85 +0.5
761,701 + +1.3
761,701 + +0.4
761,701 + -0.3
761,701 + +0.1
761,701 + +0.3
761,702 - +0.0
761,704 + +0.1
761,704 + +0.5
761,704 + +0.1
761,704 + -1.3
761,705 - +0.1
761,705 - +1.1
761,705 - +1.5
761,710 + +0.4
761,710 + -0.7
761,710 + +0.6
761,710 + -0.1
761,711 - -2.1
761,791 + -1.0

Or see this region's nucleotide sequence