Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5070 and Pf1N1B4_5071 are separated by 233 nucleotides Pf1N1B4_5071 and Pf1N1B4_5072 are separated by 90 nucleotides Pf1N1B4_5072 and Pf1N1B4_5073 are separated by 4 nucleotides
Pf1N1B4_5070 - Aspartate aminotransferase (EC 2.6.1.1), at 5,615,002 to 5,616,216
_5070
Pf1N1B4_5071 - FIG00959535: hypothetical protein, at 5,616,450 to 5,617,673
_5071
Pf1N1B4_5072 - Glycerol-3-phosphate regulon repressor, at 5,617,764 to 5,618,582
_5072
Pf1N1B4_5073 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 5,618,587 to 5,619,369
_5073
Position (kb) 5616
5617
5618 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5615.555 kb on - strand, within Pf1N1B4_5070 at 5615.632 kb on + strand at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.666 kb on - strand at 5615.666 kb on - strand, within Pf1N1B4_5070 at 5615.986 kb on + strand, within Pf1N1B4_5070 at 5615.986 kb on + strand at 5615.987 kb on - strand, within Pf1N1B4_5070 at 5616.201 kb on + strand at 5616.222 kb on - strand at 5616.296 kb on + strand at 5616.297 kb on - strand at 5616.310 kb on - strand at 5616.345 kb on - strand at 5617.002 kb on + strand at 5617.324 kb on - strand, within Pf1N1B4_5071 at 5617.521 kb on + strand, within Pf1N1B4_5071 at 5617.521 kb on + strand, within Pf1N1B4_5071 at 5617.549 kb on - strand, within Pf1N1B4_5071 at 5617.711 kb on + strand at 5617.954 kb on - strand, within Pf1N1B4_5072 at 5618.094 kb on + strand, within Pf1N1B4_5072 at 5618.133 kb on + strand, within Pf1N1B4_5072 at 5618.136 kb on - strand, within Pf1N1B4_5072 at 5618.457 kb on + strand, within Pf1N1B4_5072 at 5618.458 kb on - strand, within Pf1N1B4_5072 at 5618.580 kb on + strand at 5618.581 kb on - strand at 5618.635 kb on - strand at 5618.673 kb on - strand, within Pf1N1B4_5073
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,615,555 - Pf1N1B4_5070 0.46 +2.1 5,615,632 + +1.8 5,615,632 + Pf1N1B4_5070 0.52 -0.3 5,615,632 + Pf1N1B4_5070 0.52 +0.5 5,615,632 + Pf1N1B4_5070 0.52 +0.2 5,615,633 - Pf1N1B4_5070 0.52 +0.3 5,615,633 - Pf1N1B4_5070 0.52 -0.2 5,615,633 - Pf1N1B4_5070 0.52 -0.2 5,615,633 - Pf1N1B4_5070 0.52 -1.3 5,615,633 - Pf1N1B4_5070 0.52 +0.2 5,615,633 - Pf1N1B4_5070 0.52 -0.2 5,615,666 - +0.1 5,615,666 - Pf1N1B4_5070 0.55 -0.5 5,615,986 + Pf1N1B4_5070 0.81 +0.5 5,615,986 + -0.1 5,615,987 - Pf1N1B4_5070 0.81 +0.5 5,616,201 + +1.0 5,616,222 - -0.1 5,616,296 + +0.5 5,616,297 - +1.0 5,616,310 - +0.2 5,616,345 - +0.8 5,617,002 + +0.5 5,617,324 - Pf1N1B4_5071 0.71 +1.1 5,617,521 + Pf1N1B4_5071 0.88 -1.1 5,617,521 + Pf1N1B4_5071 0.88 -2.1 5,617,549 - Pf1N1B4_5071 0.90 -0.4 5,617,711 + +0.2 5,617,954 - Pf1N1B4_5072 0.23 +0.7 5,618,094 + Pf1N1B4_5072 0.40 -1.6 5,618,133 + Pf1N1B4_5072 0.45 +0.1 5,618,136 - Pf1N1B4_5072 0.45 -0.1 5,618,457 + Pf1N1B4_5072 0.85 -1.0 5,618,458 - Pf1N1B4_5072 0.85 -0.6 5,618,580 + -0.5 5,618,581 - -0.2 5,618,635 - +0.5 5,618,673 - Pf1N1B4_5073 0.11 +0.2
Or see this region's nucleotide sequence