Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05525

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05520 and HSERO_RS05525 overlap by 4 nucleotidesHSERO_RS05525 and HSERO_RS05530 are separated by 214 nucleotides HSERO_RS05520: HSERO_RS05520 - phosphogluconate dehydratase, at 1,250,683 to 1,252,554 _RS05520 HSERO_RS05525: HSERO_RS05525 - ketohydroxyglutarate aldolase, at 1,252,551 to 1,253,180 _RS05525 HSERO_RS05530: HSERO_RS05530 - prolipoprotein diacylglyceryl transferase, at 1,253,395 to 1,254,231 _RS05530 Position (kb) 1252 1253 1254Strain fitness (log2 ratio) -1 0 1at 1253.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,253,442 + -0.5

Or see this region's nucleotide sequence