Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS25430 and CA265_RS25435 are separated by 0 nucleotides CA265_RS25435 and CA265_RS25440 are separated by 17 nucleotides CA265_RS25440 and CA265_RS25445 are separated by 87 nucleotides
CA265_RS25430: CA265_RS25430 - UDP-glucose 4-epimerase GalE, at 6,175,011 to 6,176,033
_RS25430
CA265_RS25435: CA265_RS25435 - hypothetical protein, at 6,176,034 to 6,176,591
_RS25435
CA265_RS25440: CA265_RS25440 - capsular biosynthesis protein, at 6,176,609 to 6,177,346
_RS25440
CA265_RS25445: CA265_RS25445 - ABC transporter, at 6,177,434 to 6,178,663
_RS25445
Position (kb)
6176
6177
6178 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6176.016 kb on - strand at 6176.105 kb on - strand, within CA265_RS25435 at 6176.306 kb on + strand, within CA265_RS25435 at 6176.455 kb on + strand, within CA265_RS25435 at 6176.459 kb on + strand, within CA265_RS25435 at 6176.513 kb on + strand, within CA265_RS25435 at 6176.525 kb on + strand, within CA265_RS25435 at 6176.540 kb on + strand at 6176.545 kb on + strand at 6176.603 kb on - strand at 6176.760 kb on + strand, within CA265_RS25440 at 6176.909 kb on + strand, within CA265_RS25440 at 6176.956 kb on - strand, within CA265_RS25440 at 6176.989 kb on - strand, within CA265_RS25440 at 6176.989 kb on - strand, within CA265_RS25440 at 6177.026 kb on - strand, within CA265_RS25440 at 6177.028 kb on - strand, within CA265_RS25440 at 6177.092 kb on + strand, within CA265_RS25440 at 6177.093 kb on - strand, within CA265_RS25440 at 6177.110 kb on + strand, within CA265_RS25440 at 6177.173 kb on + strand, within CA265_RS25440 at 6177.195 kb on + strand, within CA265_RS25440 at 6177.220 kb on + strand, within CA265_RS25440 at 6177.255 kb on + strand, within CA265_RS25440 at 6177.256 kb on - strand, within CA265_RS25440 at 6177.286 kb on + strand at 6177.344 kb on + strand at 6177.385 kb on + strand at 6177.386 kb on - strand at 6177.386 kb on - strand at 6177.435 kb on + strand at 6177.435 kb on + strand at 6177.441 kb on + strand at 6177.441 kb on + strand at 6177.521 kb on + strand at 6177.522 kb on - strand at 6177.524 kb on + strand at 6177.525 kb on - strand at 6177.525 kb on - strand at 6177.636 kb on - strand, within CA265_RS25445 at 6177.644 kb on + strand, within CA265_RS25445 at 6177.703 kb on + strand, within CA265_RS25445 at 6177.724 kb on + strand, within CA265_RS25445 at 6177.752 kb on - strand, within CA265_RS25445 at 6177.758 kb on + strand, within CA265_RS25445 at 6177.788 kb on - strand, within CA265_RS25445 at 6177.788 kb on - strand, within CA265_RS25445 at 6177.797 kb on - strand, within CA265_RS25445 at 6177.896 kb on + strand, within CA265_RS25445 at 6177.962 kb on - strand, within CA265_RS25445 at 6177.985 kb on - strand, within CA265_RS25445 at 6178.036 kb on - strand, within CA265_RS25445 at 6178.085 kb on + strand, within CA265_RS25445 at 6178.085 kb on + strand, within CA265_RS25445 at 6178.086 kb on - strand, within CA265_RS25445 at 6178.116 kb on - strand, within CA265_RS25445 at 6178.220 kb on - strand, within CA265_RS25445 at 6178.274 kb on + strand, within CA265_RS25445 at 6178.318 kb on - strand, within CA265_RS25445
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 6,176,016 - +1.6 6,176,105 - CA265_RS25435 0.13 +0.1 6,176,306 + CA265_RS25435 0.49 -0.1 6,176,455 + CA265_RS25435 0.75 +0.1 6,176,459 + CA265_RS25435 0.76 -0.5 6,176,513 + CA265_RS25435 0.86 -0.2 6,176,525 + CA265_RS25435 0.88 +2.2 6,176,540 + +0.5 6,176,545 + -0.7 6,176,603 - +0.2 6,176,760 + CA265_RS25440 0.20 -1.2 6,176,909 + CA265_RS25440 0.41 +1.0 6,176,956 - CA265_RS25440 0.47 +0.3 6,176,989 - CA265_RS25440 0.51 -0.0 6,176,989 - CA265_RS25440 0.51 -1.4 6,177,026 - CA265_RS25440 0.57 +0.2 6,177,028 - CA265_RS25440 0.57 -0.5 6,177,092 + CA265_RS25440 0.65 -0.3 6,177,093 - CA265_RS25440 0.66 -0.4 6,177,110 + CA265_RS25440 0.68 -0.9 6,177,173 + CA265_RS25440 0.76 +0.2 6,177,195 + CA265_RS25440 0.79 -0.9 6,177,220 + CA265_RS25440 0.83 -0.4 6,177,255 + CA265_RS25440 0.88 -0.6 6,177,256 - CA265_RS25440 0.88 -0.4 6,177,286 + +0.6 6,177,344 + -0.9 6,177,385 + -0.5 6,177,386 - -0.9 6,177,386 - -1.0 6,177,435 + -1.9 6,177,435 + -1.0 6,177,441 + -0.1 6,177,441 + -1.1 6,177,521 + -0.0 6,177,522 - +0.1 6,177,524 + -0.2 6,177,525 - -0.8 6,177,525 - -0.4 6,177,636 - CA265_RS25445 0.16 -1.8 6,177,644 + CA265_RS25445 0.17 -1.9 6,177,703 + CA265_RS25445 0.22 -0.3 6,177,724 + CA265_RS25445 0.24 -0.2 6,177,752 - CA265_RS25445 0.26 -0.4 6,177,758 + CA265_RS25445 0.26 -1.3 6,177,788 - CA265_RS25445 0.29 -0.7 6,177,788 - CA265_RS25445 0.29 -1.1 6,177,797 - CA265_RS25445 0.30 +1.1 6,177,896 + CA265_RS25445 0.38 -1.0 6,177,962 - CA265_RS25445 0.43 -1.1 6,177,985 - CA265_RS25445 0.45 +0.3 6,178,036 - CA265_RS25445 0.49 -1.0 6,178,085 + CA265_RS25445 0.53 -1.5 6,178,085 + CA265_RS25445 0.53 -1.3 6,178,086 - CA265_RS25445 0.53 -0.1 6,178,116 - CA265_RS25445 0.55 +0.2 6,178,220 - CA265_RS25445 0.64 +0.5 6,178,274 + CA265_RS25445 0.68 -0.9 6,178,318 - CA265_RS25445 0.72 -1.4
Or see this region's nucleotide sequence