Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23955

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,839,602	+		CA265_RS23945	0.30	+1.2
5,839,602	+		CA265_RS23945	0.30	-0.0
5,839,602	+		CA265_RS23945	0.30	-0.7
5,839,603	-		CA265_RS23945	0.31	-1.2
5,839,603	-		CA265_RS23945	0.31	+0.3
5,839,603	-		CA265_RS23945	0.31	+0.6
5,839,603	-		CA265_RS23945	0.31	-0.3
5,839,603	-		CA265_RS23945	0.31	-1.5
5,839,661	-		CA265_RS23945	0.48	+0.1
5,839,702	-		CA265_RS23945	0.60	-0.2
5,839,775	-		CA265_RS23945	0.81	-0.2
5,839,828	-				+0.1
5,839,828	-				-0.4
5,839,830	-				-0.9
5,839,830	-				+0.1
5,839,830	-				-1.4
5,839,850	+				-1.6
5,839,850	+				-1.3
5,839,851	-				-0.0
5,839,944	-				+0.3
5,839,951	-				-0.6
5,839,978	-				-0.4
5,840,089	+		CA265_RS23950	0.21	-0.9
5,840,108	-		CA265_RS23950	0.24	+1.6
5,840,142	-		CA265_RS23950	0.30	-0.4
5,840,144	-		CA265_RS23950	0.30	+0.0
5,840,272	-		CA265_RS23950	0.51	+0.6
5,840,305	-		CA265_RS23950	0.56	-0.8
5,840,321	+		CA265_RS23950	0.59	+0.9
5,840,353	+		CA265_RS23950	0.64	-2.1
5,840,400	+		CA265_RS23950	0.72	-1.9
5,840,433	+		CA265_RS23950	0.77	-0.9
5,840,613	+				-0.4
5,840,637	+				+0.2
5,840,637	+				-0.9
5,840,662	-				-1.8
5,840,662	-				-3.0
5,840,697	+				-2.8
5,840,700	+				-1.6
5,840,701	-				-0.3
5,840,701	-				-1.1
5,840,739	+		CA265_RS23955	0.12	-1.3
5,840,753	-		CA265_RS23955	0.13	-1.9
5,840,761	-		CA265_RS23955	0.14	-1.5
5,840,776	-		CA265_RS23955	0.15	-1.3
5,840,776	-		CA265_RS23955	0.15	-1.5
5,840,788	+		CA265_RS23955	0.16	-0.0
5,840,807	+		CA265_RS23955	0.18	-1.8
5,840,870	-		CA265_RS23955	0.23	+0.0
5,840,925	+		CA265_RS23955	0.28	-1.0
5,840,960	-		CA265_RS23955	0.31	-1.5
5,840,983	-		CA265_RS23955	0.32	-2.6
5,841,017	+		CA265_RS23955	0.35	-0.8
5,841,018	-		CA265_RS23955	0.35	-1.5
5,841,025	-		CA265_RS23955	0.36	-1.6
5,841,025	-		CA265_RS23955	0.36	-0.4
5,841,103	-		CA265_RS23955	0.42	-0.6
5,841,174	+		CA265_RS23955	0.48	+0.1
5,841,175	-		CA265_RS23955	0.48	-3.4
5,841,177	-		CA265_RS23955	0.49	-1.4
5,841,245	+		CA265_RS23955	0.54	+0.3
5,841,245	+		CA265_RS23955	0.54	-0.8
5,841,245	+		CA265_RS23955	0.54	-1.5
5,841,246	-		CA265_RS23955	0.54	-1.4
5,841,340	-		CA265_RS23955	0.62	-1.9
5,841,352	-		CA265_RS23955	0.63	-1.6
5,841,367	-		CA265_RS23955	0.64	-1.6
5,841,383	-		CA265_RS23955	0.66	-2.5
5,841,538	-		CA265_RS23955	0.79	-1.5
5,841,579	+		CA265_RS23955	0.82	-1.3
5,841,579	+		CA265_RS23955	0.82	-3.2
5,841,681	+				+0.9
5,841,798	-				-0.6
5,841,801	+				-0.1
5,841,801	+				+0.1
5,841,896	-				-0.2
5,841,996	-				+1.0
5,841,996	-				+3.8
5,841,996	-				+0.9
5,841,996	-				+0.6
5,842,006	-				+1.2
5,842,009	-				+0.5
5,842,193	+		CA265_RS23960	0.13	+0.8
5,842,555	-		CA265_RS23960	0.47	-1.2