Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23635

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,771,188	+		CA265_RS23625	0.62	+0.2
5,771,188	+		CA265_RS23625	0.62	-0.0
5,771,188	+		CA265_RS23625	0.62	+0.7
5,771,189	-		CA265_RS23625	0.62	+1.2
5,771,242	-		CA265_RS23625	0.71	-0.2
5,771,270	+		CA265_RS23625	0.75	-0.7
5,771,270	+		CA265_RS23625	0.75	+0.1
5,771,271	-		CA265_RS23625	0.75	-0.5
5,771,272	+		CA265_RS23625	0.75	-1.9
5,771,273	-		CA265_RS23625	0.76	+0.5
5,771,285	+		CA265_RS23625	0.77	+0.4
5,771,293	+		CA265_RS23625	0.79	+0.1
5,771,293	+		CA265_RS23625	0.79	-0.6
5,771,297	-		CA265_RS23625	0.79	-0.0
5,771,415	-				-0.5
5,771,415	-				-0.5
5,771,432	-				-0.1
5,771,434	-				-1.8
5,771,438	+				+0.1
5,771,445	-				-0.7
5,771,496	-		CA265_RS23630	0.14	-1.6
5,771,496	-		CA265_RS23630	0.14	-0.8
5,771,555	+		CA265_RS23630	0.25	-0.4
5,771,566	-		CA265_RS23630	0.28	+0.2
5,771,575	-		CA265_RS23630	0.29	-0.0
5,771,607	+		CA265_RS23630	0.36	+0.4
5,771,617	-		CA265_RS23630	0.38	+1.1
5,771,638	-		CA265_RS23630	0.42	-0.4
5,771,679	-		CA265_RS23630	0.50	-0.8
5,771,728	-		CA265_RS23630	0.60	-0.6
5,771,859	-		CA265_RS23630	0.86	-1.6
5,771,945	-				-1.7
5,771,991	+				-0.6
5,771,991	+				+1.6
5,772,058	-				-1.1
5,772,060	-				+0.4
5,772,116	+				-0.4
5,772,117	-				+0.3
5,772,291	+		CA265_RS23635	0.11	+1.0
5,772,292	-		CA265_RS23635	0.11	+1.5
5,772,315	-		CA265_RS23635	0.12	+1.7
5,772,362	-		CA265_RS23635	0.15	+0.9
5,772,536	+		CA265_RS23635	0.26	+0.4
5,772,588	+		CA265_RS23635	0.29	+0.4
5,772,593	+		CA265_RS23635	0.29	-0.2
5,772,597	+		CA265_RS23635	0.29	+1.0
5,772,631	-		CA265_RS23635	0.31	+1.3
5,772,631	-		CA265_RS23635	0.31	+0.9
5,772,637	-		CA265_RS23635	0.32	+1.5
5,772,689	+		CA265_RS23635	0.35	-0.9
5,772,689	+		CA265_RS23635	0.35	+1.1
5,772,690	-		CA265_RS23635	0.35	+1.6
5,772,751	+		CA265_RS23635	0.39	+2.4
5,772,771	+		CA265_RS23635	0.40	+1.4
5,772,772	-		CA265_RS23635	0.40	+1.6
5,772,773	+		CA265_RS23635	0.40	+1.7
5,772,773	+		CA265_RS23635	0.40	+1.0
5,772,774	-		CA265_RS23635	0.40	+0.9
5,772,810	+		CA265_RS23635	0.42	-0.6
5,772,811	-		CA265_RS23635	0.42	+1.8
5,772,837	+		CA265_RS23635	0.44	+1.1
5,772,895	-		CA265_RS23635	0.47	+0.9
5,772,905	-		CA265_RS23635	0.48	+1.2
5,772,920	+		CA265_RS23635	0.49	+0.7
5,772,920	+		CA265_RS23635	0.49	+1.8
5,772,944	-		CA265_RS23635	0.50	+1.0
5,772,964	+		CA265_RS23635	0.51	+2.0
5,772,965	-		CA265_RS23635	0.52	+2.1
5,772,965	-		CA265_RS23635	0.52	+2.1
5,772,994	-		CA265_RS23635	0.53	+1.6
5,773,015	-		CA265_RS23635	0.55	-0.4
5,773,042	-		CA265_RS23635	0.56	+2.3
5,773,042	-		CA265_RS23635	0.56	+1.2
5,773,071	-		CA265_RS23635	0.58	+0.5
5,773,118	+		CA265_RS23635	0.61	+1.5
5,773,119	-		CA265_RS23635	0.61	+0.9
5,773,119	-		CA265_RS23635	0.61	+0.1
5,773,132	-		CA265_RS23635	0.62	+1.0
5,773,207	-		CA265_RS23635	0.66	+2.0
5,773,304	-		CA265_RS23635	0.72	+1.5
5,773,337	-		CA265_RS23635	0.74	+2.0
5,773,340	+		CA265_RS23635	0.74	+0.5
5,773,348	+		CA265_RS23635	0.75	+1.3
5,773,348	+		CA265_RS23635	0.75	+1.1
5,773,363	-		CA265_RS23635	0.76	+0.4
5,773,365	-		CA265_RS23635	0.76	+1.3
5,773,370	-		CA265_RS23635	0.76	+0.7
5,773,387	+		CA265_RS23635	0.77	+0.7
5,773,387	+		CA265_RS23635	0.77	+1.3
5,773,437	+		CA265_RS23635	0.80	+0.8
5,773,437	+		CA265_RS23635	0.80	+0.9
5,773,437	+		CA265_RS23635	0.80	+0.7
5,773,437	+		CA265_RS23635	0.80	+0.7
5,773,438	-		CA265_RS23635	0.80	+1.6
5,773,438	-		CA265_RS23635	0.80	-1.6
5,773,439	+		CA265_RS23635	0.80	+1.0
5,773,457	+		CA265_RS23635	0.81	+1.8
5,773,535	+		CA265_RS23635	0.86	+2.0
5,773,535	+		CA265_RS23635	0.86	+1.2
5,773,535	+		CA265_RS23635	0.86	+1.2
5,773,610	-				+1.4
5,773,632	+				-1.1
5,773,633	-				+0.3
5,773,634	+				+1.0
5,773,642	-				+2.3
5,773,716	+				+1.0
5,773,717	-				-0.7
5,773,717	-				+2.4
5,773,717	-				+0.9
5,773,735	-				+2.6
5,773,779	-				+1.6
5,773,780	+				+1.1
5,773,846	-				+0.1
5,774,025	-				+0.0
5,774,044	+				-1.0
5,774,044	+				-0.2
5,774,045	-				-0.1
5,774,047	-				+0.4
5,774,047	-				-0.6
5,774,047	-				+0.3
5,774,086	+				+1.1
5,774,109	-				+0.6
5,774,109	-				-0.6
5,774,124	-				+0.2
5,774,136	+				-0.3
5,774,138	+				-0.6
5,774,155	+				-0.8
5,774,295	+				+0.2
5,774,296	-				+0.4
5,774,315	-				+0.2
5,774,322	-				-0.5
5,774,356	-				+0.4
5,774,380	+				-0.4
5,774,380	+				+2.1
5,774,420	-				+0.7
5,774,424	-				+1.9
5,774,448	-				+1.2
5,774,448	-				-1.2
5,774,521	-				+1.5
5,774,528	-				+1.0
5,774,557	+		CA265_RS23640	0.10	+1.7
5,774,558	-		CA265_RS23640	0.10	+1.2
5,774,558	-		CA265_RS23640	0.10	+1.1
5,774,558	-		CA265_RS23640	0.10	+1.5
5,774,559	+		CA265_RS23640	0.10	+1.5
5,774,560	-		CA265_RS23640	0.11	+1.3
5,774,560	-		CA265_RS23640	0.11	+0.4
5,774,563	-		CA265_RS23640	0.11	+1.5
5,774,647	-		CA265_RS23640	0.18	+2.3
5,774,647	-		CA265_RS23640	0.18	+1.3
5,774,660	-		CA265_RS23640	0.19	+1.5
5,774,663	-		CA265_RS23640	0.19	+1.2
5,774,714	+		CA265_RS23640	0.23	+0.9
5,774,715	-		CA265_RS23640	0.24	+1.2
5,774,716	+		CA265_RS23640	0.24	+0.5
5,774,747	-		CA265_RS23640	0.26	+1.4
5,774,750	-		CA265_RS23640	0.27	+1.3