Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23425

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,728,495	-		CA265_RS23420	0.54	-1.7
5,728,501	+		CA265_RS23420	0.54	-0.6
5,728,587	+		CA265_RS23420	0.60	-1.1
5,728,642	-		CA265_RS23420	0.63	-2.0
5,728,642	-		CA265_RS23420	0.63	-2.4
5,728,651	+		CA265_RS23420	0.64	-1.8
5,728,672	-		CA265_RS23420	0.65	-1.2
5,728,711	+		CA265_RS23420	0.68	-1.4
5,728,734	+		CA265_RS23420	0.69	-1.5
5,728,786	+		CA265_RS23420	0.72	-1.3
5,728,800	+		CA265_RS23420	0.73	-3.0
5,728,854	+		CA265_RS23420	0.76	-3.2
5,728,892	+		CA265_RS23420	0.79	-1.6
5,728,896	-		CA265_RS23420	0.79	-3.2
5,728,942	-		CA265_RS23420	0.82	-1.1
5,728,993	+		CA265_RS23420	0.85	-0.9
5,729,012	-		CA265_RS23420	0.86	+0.9
5,729,069	-		CA265_RS23420	0.90	-2.0
5,729,173	+				-3.7
5,729,271	-				+1.6
5,729,307	-				+0.2
5,729,403	-				+1.2
5,729,423	-				-1.9
5,729,450	-				-0.3
5,729,503	+				-3.0
5,729,644	-		CA265_RS23425	0.27	-2.6
5,729,647	-		CA265_RS23425	0.28	-3.1
5,729,668	+		CA265_RS23425	0.30	-1.4
5,729,669	-		CA265_RS23425	0.31	+0.5
5,729,672	+		CA265_RS23425	0.31	-3.3
5,729,839	+		CA265_RS23425	0.52	+2.3
5,729,850	+		CA265_RS23425	0.53	-1.9
5,729,875	+		CA265_RS23425	0.56	-0.5
5,729,908	+		CA265_RS23425	0.60	-0.5
5,730,249	+				-0.5
5,730,255	+				-0.0
5,730,255	+				+0.2
5,730,302	-				-0.6
5,730,302	-				+0.2
5,730,305	+				+1.5
5,730,315	+				+1.7
5,730,334	+				+3.2
5,730,337	+				+2.5
5,730,355	+				+2.4
5,730,388	+		CA265_RS23430	0.13	+3.1
5,730,388	+		CA265_RS23430	0.13	+3.0
5,730,441	-		CA265_RS23430	0.22	-0.1
5,730,481	+		CA265_RS23430	0.29	+2.5
5,730,481	+		CA265_RS23430	0.29	+3.2
5,730,495	-		CA265_RS23430	0.32	-0.7
5,730,497	-		CA265_RS23430	0.32	-1.1
5,730,497	-		CA265_RS23430	0.32	+1.0
5,730,535	-		CA265_RS23430	0.39	-1.5
5,730,571	-		CA265_RS23430	0.45	-0.4
5,730,589	-		CA265_RS23430	0.48	+0.9
5,730,615	+		CA265_RS23430	0.53	+2.4
5,730,676	+		CA265_RS23430	0.63	+3.0
5,730,676	+		CA265_RS23430	0.63	+1.7
5,730,677	-		CA265_RS23430	0.64	-0.2
5,730,677	-		CA265_RS23430	0.64	-0.1
5,730,776	-		CA265_RS23430	0.81	-0.0
5,730,778	+		CA265_RS23430	0.81	+2.3
5,730,778	+		CA265_RS23430	0.81	+1.5
5,730,902	+				+0.9
5,730,984	-				-2.5
5,731,009	+		CA265_RS23435	0.12	-1.0
5,731,027	+		CA265_RS23435	0.14	-0.9
5,731,028	-		CA265_RS23435	0.14	-2.1
5,731,096	-		CA265_RS23435	0.23	-0.7
5,731,097	+		CA265_RS23435	0.23	-0.8
5,731,147	+		CA265_RS23435	0.30	-1.3
5,731,148	-		CA265_RS23435	0.30	-2.3
5,731,165	+		CA265_RS23435	0.32	-2.2
5,731,169	-		CA265_RS23435	0.33	-4.2
5,731,214	-		CA265_RS23435	0.39	-1.8