Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22985

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,622,924	+		CA265_RS22975	0.51	+0.2
5,622,987	-		CA265_RS22975	0.59	+1.3
5,623,086	-		CA265_RS22975	0.71	+0.8
5,623,086	-		CA265_RS22975	0.71	-0.1
5,623,097	+		CA265_RS22975	0.73	-1.1
5,623,098	-		CA265_RS22975	0.73	+0.2
5,623,248	-				-0.3
5,623,291	-				-0.7
5,623,293	+				-0.8
5,623,293	+				-0.6
5,623,299	-				+1.0
5,623,300	+				+0.1
5,623,301	-				-0.5
5,623,344	+				-0.9
5,623,415	+		CA265_RS22980	0.12	+0.5
5,623,466	-		CA265_RS22980	0.28	+1.9
5,623,496	+		CA265_RS22980	0.38	-0.4
5,623,576	-		CA265_RS22980	0.63	-0.1
5,623,576	-		CA265_RS22980	0.63	-1.0
5,623,576	-		CA265_RS22980	0.63	+1.6
5,623,664	+				-1.4
5,623,665	-				-0.4
5,623,713	+				-2.2
5,623,717	+				-0.7
5,623,719	-				-0.8
5,623,719	-				-0.7
5,623,719	-				+0.5
5,623,721	-				-0.5
5,623,807	-				-0.5
5,623,827	+				+0.2
5,623,872	+				-3.4
5,623,894	-				-3.5
5,623,902	+				-1.9
5,623,903	-				-3.3
5,623,949	-				-1.5
5,623,990	+				-0.1
5,623,991	-				-0.1
5,624,067	+				-2.3
5,624,250	-		CA265_RS22985	0.13	-0.5
5,624,331	+		CA265_RS22985	0.16	-2.4
5,624,332	-		CA265_RS22985	0.16	-1.1
5,624,416	+		CA265_RS22985	0.18	+3.1
5,624,543	+		CA265_RS22985	0.23	-4.3
5,624,546	+		CA265_RS22985	0.23	-2.1
5,624,602	+		CA265_RS22985	0.25	-0.9
5,624,662	+		CA265_RS22985	0.27	-0.4
5,624,662	+		CA265_RS22985	0.27	-2.5
5,624,712	-		CA265_RS22985	0.29	-2.8
5,624,712	-		CA265_RS22985	0.29	-0.2
5,624,736	+		CA265_RS22985	0.30	-1.9
5,624,756	-		CA265_RS22985	0.30	+0.2
5,624,824	-		CA265_RS22985	0.33	-3.3
5,624,824	-		CA265_RS22985	0.33	-2.3
5,624,878	-		CA265_RS22985	0.34	+0.7
5,624,901	+		CA265_RS22985	0.35	-1.1
5,624,901	+		CA265_RS22985	0.35	-2.4
5,624,936	-		CA265_RS22985	0.36	-1.4
5,624,957	+		CA265_RS22985	0.37	-2.9
5,624,958	-		CA265_RS22985	0.37	-2.0
5,624,965	-		CA265_RS22985	0.37	-1.5
5,624,971	-		CA265_RS22985	0.38	-0.8
5,624,971	-		CA265_RS22985	0.38	-2.1
5,624,979	-		CA265_RS22985	0.38	-1.6
5,625,004	-		CA265_RS22985	0.39	-1.6
5,625,013	-		CA265_RS22985	0.39	-1.4
5,625,022	-		CA265_RS22985	0.39	-0.7
5,625,031	+		CA265_RS22985	0.40	-0.5
5,625,057	+		CA265_RS22985	0.41	-0.5
5,625,078	-		CA265_RS22985	0.41	-0.4
5,625,078	-		CA265_RS22985	0.41	-0.9
5,625,103	-		CA265_RS22985	0.42	-2.1
5,625,164	-		CA265_RS22985	0.44	-2.0
5,625,221	+		CA265_RS22985	0.46	-1.6
5,625,246	+		CA265_RS22985	0.47	-1.1
5,625,247	-		CA265_RS22985	0.47	-0.5
5,625,249	-		CA265_RS22985	0.47	-2.8
5,625,272	-		CA265_RS22985	0.48	-2.4
5,625,360	+		CA265_RS22985	0.51	-0.3
5,625,391	+		CA265_RS22985	0.52	-2.3
5,625,458	+		CA265_RS22985	0.54	-1.8
5,625,465	+		CA265_RS22985	0.55	-2.2
5,625,483	+		CA265_RS22985	0.55	-2.3
5,625,534	+		CA265_RS22985	0.57	+0.2
5,625,535	-		CA265_RS22985	0.57	+0.1
5,625,711	+		CA265_RS22985	0.63	-1.6
5,625,730	-		CA265_RS22985	0.64	-1.2
5,625,741	-		CA265_RS22985	0.64	-2.1
5,625,901	+		CA265_RS22985	0.70	-1.2
5,625,902	-		CA265_RS22985	0.70	-2.0
5,625,902	-		CA265_RS22985	0.70	-2.3
5,625,902	-		CA265_RS22985	0.70	-2.7
5,625,937	-		CA265_RS22985	0.71	-1.0
5,625,952	-		CA265_RS22985	0.72	-1.0
5,626,052	+		CA265_RS22985	0.75	-0.8
5,626,053	-		CA265_RS22985	0.75	-2.2
5,626,053	-		CA265_RS22985	0.75	-1.0
5,626,098	-		CA265_RS22985	0.77	-1.2
5,626,101	+		CA265_RS22985	0.77	-1.0
5,626,129	-		CA265_RS22985	0.78	-2.4
5,626,137	+		CA265_RS22985	0.78	-0.8
5,626,170	+		CA265_RS22985	0.79	-0.7
5,626,192	+		CA265_RS22985	0.80	-1.5
5,626,192	+		CA265_RS22985	0.80	-1.9
5,626,193	-		CA265_RS22985	0.80	+0.3
5,626,264	+		CA265_RS22985	0.82	-0.1
5,626,394	-		CA265_RS22985	0.87	-1.8
5,626,397	+		CA265_RS22985	0.87	-1.2
5,626,397	+		CA265_RS22985	0.87	+0.3
5,626,532	+				-0.5
5,626,587	-				-1.8
5,626,594	-				+0.3
5,626,600	+				-0.6
5,626,712	+				-1.9
5,626,734	-				+0.6
5,626,744	-				-0.7
5,626,753	-				-1.8
5,626,758	+				-1.7
5,626,769	-				-1.1
5,626,800	+				-2.4
5,626,801	-				+0.7
5,626,824	+				-1.5
5,626,829	+				+0.0
5,626,840	+				+0.3
5,626,840	+				-1.4
5,626,909	+				-0.3
5,626,972	-				-1.2
5,626,973	+				-1.1
5,626,988	+				-0.4
5,627,005	+				-0.8
5,627,012	-				-0.0
5,627,052	-				-0.9
5,627,135	+				+0.0
5,627,138	-				-1.7
5,627,209	-		CA265_RS22990	0.15	+0.1
5,627,253	-		CA265_RS22990	0.20	-0.3
5,627,263	-		CA265_RS22990	0.21	+0.1
5,627,350	-		CA265_RS22990	0.29	-0.4
5,627,357	+		CA265_RS22990	0.30	+0.7
5,627,357	+		CA265_RS22990	0.30	-0.9
5,627,359	+		CA265_RS22990	0.30	+2.2
5,627,437	-		CA265_RS22990	0.38	-1.3
5,627,447	+		CA265_RS22990	0.39	-1.1
5,627,447	+		CA265_RS22990	0.39	-0.3
5,627,447	+		CA265_RS22990	0.39	-1.0
5,627,448	-		CA265_RS22990	0.39	-0.5
5,627,448	-		CA265_RS22990	0.39	+0.0
5,627,518	+		CA265_RS22990	0.46	+1.3
5,627,542	-		CA265_RS22990	0.48	-0.1
5,627,615	-		CA265_RS22990	0.55	+0.7
5,627,615	-		CA265_RS22990	0.55	-0.8
5,627,623	-		CA265_RS22990	0.56	-1.1
5,627,624	+		CA265_RS22990	0.56	-0.8
5,627,625	-		CA265_RS22990	0.56	+0.1
5,627,625	-		CA265_RS22990	0.56	-0.2
5,627,626	+		CA265_RS22990	0.57	-0.2
5,627,626	+		CA265_RS22990	0.57	-0.2
5,627,750	-		CA265_RS22990	0.69	+1.2
5,627,750	-		CA265_RS22990	0.69	+0.8