Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21865

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,370,632	+		CA265_RS21855	0.70	+0.9
5,370,746	+		CA265_RS21855	0.80	-1.5
5,370,786	+		CA265_RS21855	0.84	-0.3
5,370,788	+		CA265_RS21855	0.84	-0.6
5,370,828	-		CA265_RS21855	0.87	+0.8
5,370,829	+		CA265_RS21855	0.87	-1.1
5,370,893	+				-2.6
5,370,947	-				+1.4
5,370,950	+				-0.5
5,370,982	+				+0.8
5,371,026	+				+0.7
5,371,031	+				+0.1
5,371,036	+				+0.8
5,371,418	+				-1.1
5,371,514	+				+0.6
5,371,514	+				-0.8
5,371,515	-				-0.2
5,371,572	+				-0.0
5,371,647	-				-2.6
5,371,713	+				+2.3
5,371,781	-				-0.6
5,371,787	+				+3.2
5,371,787	+				+3.4
5,371,787	+				+2.6
5,371,844	-		CA265_RS21865	0.12	-0.5
5,371,844	-		CA265_RS21865	0.12	-0.5
5,371,871	+		CA265_RS21865	0.14	+3.3
5,371,872	-		CA265_RS21865	0.14	-1.0
5,371,872	-		CA265_RS21865	0.14	+1.5
5,371,894	-		CA265_RS21865	0.15	-0.4
5,371,897	+		CA265_RS21865	0.15	+4.2
5,371,897	+		CA265_RS21865	0.15	+3.3
5,371,897	+		CA265_RS21865	0.15	+3.5
5,371,913	-		CA265_RS21865	0.16	-0.0
5,371,952	-		CA265_RS21865	0.18	+0.6
5,371,964	+		CA265_RS21865	0.19	+2.4
5,371,965	-		CA265_RS21865	0.19	-0.8
5,371,971	-		CA265_RS21865	0.19	-2.3
5,372,105	+		CA265_RS21865	0.27	+2.3
5,372,106	-		CA265_RS21865	0.27	+0.4
5,372,192	-		CA265_RS21865	0.31	-0.1
5,372,306	+		CA265_RS21865	0.38	+2.7
5,372,368	+		CA265_RS21865	0.41	+4.8
5,372,372	+		CA265_RS21865	0.41	+3.7
5,372,372	+		CA265_RS21865	0.41	+3.1
5,372,373	-		CA265_RS21865	0.41	+1.4
5,372,373	-		CA265_RS21865	0.41	-0.9
5,372,373	-		CA265_RS21865	0.41	+0.6
5,372,421	-		CA265_RS21865	0.44	-0.2
5,372,441	-		CA265_RS21865	0.45	-1.8
5,372,564	+		CA265_RS21865	0.52	+3.1
5,372,565	-		CA265_RS21865	0.52	+0.5
5,372,565	-		CA265_RS21865	0.52	-1.0
5,372,571	-		CA265_RS21865	0.52	-0.2
5,372,652	-		CA265_RS21865	0.57	+0.2
5,372,702	-		CA265_RS21865	0.59	+0.7
5,372,731	-		CA265_RS21865	0.61	-0.9
5,372,736	-		CA265_RS21865	0.61	-1.0
5,372,898	-		CA265_RS21865	0.70	-0.5
5,372,945	-		CA265_RS21865	0.73	-2.1
5,373,074	-		CA265_RS21865	0.80	-0.4
5,373,074	-		CA265_RS21865	0.80	-0.9
5,373,116	-		CA265_RS21865	0.82	-1.0
5,373,122	-		CA265_RS21865	0.82	-0.6
5,373,131	-		CA265_RS21865	0.83	-2.0
5,373,159	-		CA265_RS21865	0.85	-0.7
5,373,192	-		CA265_RS21865	0.86	+0.6
5,373,267	-				+0.6
5,373,311	-				-2.0
5,373,311	-				-0.4
5,373,360	-				-1.5
5,373,360	-				-1.2
5,373,430	+				+1.4
5,373,450	-				+0.1
5,373,463	-				-0.3
5,373,482	+				+2.2
5,373,524	-				-1.1
5,373,602	+				+0.9
5,373,603	-				-0.8
5,373,669	+				+0.1
5,373,733	+				-1.6
5,373,762	-		CA265_RS21870	0.12	-1.1
5,373,765	-		CA265_RS21870	0.13	-0.2
5,373,805	-		CA265_RS21870	0.19	-0.4
5,373,826	-		CA265_RS21870	0.22	+0.4
5,373,846	+		CA265_RS21870	0.24	+1.2
5,373,847	-		CA265_RS21870	0.25	-2.2
5,373,973	+		CA265_RS21870	0.43	-1.2
5,373,974	-		CA265_RS21870	0.43	-1.6
5,373,975	+		CA265_RS21870	0.43	+1.2
5,373,995	+		CA265_RS21870	0.46	-2.5
5,373,996	-		CA265_RS21870	0.46	-2.0
5,373,996	-		CA265_RS21870	0.46	-1.2
5,374,007	+		CA265_RS21870	0.48	-0.2
5,374,054	-		CA265_RS21870	0.54	+1.1
5,374,097	-		CA265_RS21870	0.60	-1.9
5,374,111	-		CA265_RS21870	0.62	-0.2
5,374,126	-		CA265_RS21870	0.65	+1.7
5,374,181	+		CA265_RS21870	0.73	-2.0
5,374,249	-		CA265_RS21870	0.82	+0.1
5,374,270	-		CA265_RS21870	0.85	-0.2
5,374,296	+		CA265_RS21870	0.89	-0.6
5,374,297	-		CA265_RS21870	0.89	-2.0
5,374,297	-		CA265_RS21870	0.89	-0.9
5,374,352	-				-2.2
5,374,352	-				-0.0
5,374,354	-				-1.3