Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21725

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
5,341,975	-		CA265_RS21715	0.86	-1.4
5,341,993	+		CA265_RS21715	0.87	-0.5
5,342,175	-				+0.1
5,342,209	+		CA265_RS21720	0.10	-0.8
5,342,222	+		CA265_RS21720	0.12	-0.5
5,342,223	-		CA265_RS21720	0.12	+2.4
5,342,223	-		CA265_RS21720	0.12	+0.1
5,342,229	-		CA265_RS21720	0.13	-1.2
5,342,274	+		CA265_RS21720	0.21	-1.6
5,342,289	+		CA265_RS21720	0.24	-0.4
5,342,290	-		CA265_RS21720	0.24	-0.2
5,342,325	-		CA265_RS21720	0.30	+0.2
5,342,343	-		CA265_RS21720	0.33	+0.9
5,342,367	+		CA265_RS21720	0.37	+0.9
5,342,368	-		CA265_RS21720	0.37	+0.0
5,342,412	+		CA265_RS21720	0.45	-0.2
5,342,412	+		CA265_RS21720	0.45	-1.3
5,342,509	+		CA265_RS21720	0.62	-0.2
5,342,615	+		CA265_RS21720	0.80	+0.1
5,342,615	+		CA265_RS21720	0.80	+0.8
5,342,617	+		CA265_RS21720	0.80	-0.3
5,342,618	-		CA265_RS21720	0.81	+1.3
5,342,618	-		CA265_RS21720	0.81	+1.7
5,342,621	+		CA265_RS21720	0.81	+0.1
5,342,627	-		CA265_RS21720	0.82	+1.1
5,342,720	+				-1.2
5,342,742	-				+0.4
5,342,764	+				+0.3
5,342,791	+				-1.6
5,342,857	+				-0.3
5,342,885	-				-0.4
5,342,885	-				+0.7
5,342,885	-				+1.2
5,342,897	-				+0.0
5,342,924	+				-1.1
5,342,961	-				-1.1
5,342,966	-				+1.1
5,343,002	-				+0.8
5,343,002	-				+1.8
5,343,033	-		CA265_RS21725	0.11	+0.0
5,343,034	+		CA265_RS21725	0.12	-0.6
5,343,034	+		CA265_RS21725	0.12	-0.9
5,343,245	+		CA265_RS21725	0.39	-1.3
5,343,246	-		CA265_RS21725	0.39	+0.6
5,343,251	-		CA265_RS21725	0.40	-0.1
5,343,330	-		CA265_RS21725	0.50	-1.5
5,343,336	-		CA265_RS21725	0.51	-1.8
5,343,337	+		CA265_RS21725	0.51	-0.4
5,343,338	-		CA265_RS21725	0.51	-0.3
5,343,377	+		CA265_RS21725	0.57	+0.0
5,343,385	+		CA265_RS21725	0.58	-0.7
5,343,479	+		CA265_RS21725	0.70	+0.2
5,343,480	-		CA265_RS21725	0.70	+1.6
5,343,498	+		CA265_RS21725	0.72	-0.2
5,343,499	-		CA265_RS21725	0.73	-1.0
5,343,511	+		CA265_RS21725	0.74	-0.3
5,343,512	-		CA265_RS21725	0.74	-0.2
5,343,515	+		CA265_RS21725	0.75	-1.6
5,343,516	-		CA265_RS21725	0.75	+0.1
5,343,522	+		CA265_RS21725	0.76	+0.5
5,343,562	+		CA265_RS21725	0.81	-1.7
5,343,598	+		CA265_RS21725	0.86	-0.9
5,343,598	+		CA265_RS21725	0.86	-1.0
5,343,665	-				-0.6
5,343,665	-				+0.6
5,343,706	-				-0.9
5,343,706	-				-0.6
5,343,706	-				-0.1
5,343,786	-				-1.0
5,343,790	+				-1.0
5,343,813	+				-1.7
5,343,815	+				-0.5
5,343,829	+				-0.7
5,343,899	+				+0.3
5,343,899	+				-0.0
5,343,906	+				-0.5
5,343,920	+				+0.1
5,343,921	-				-0.3
5,343,969	-		CA265_RS21730	0.11	-0.3
5,343,972	+		CA265_RS21730	0.11	-1.3
5,344,041	+		CA265_RS21730	0.18	-0.5
5,344,041	+		CA265_RS21730	0.18	+0.1
5,344,042	-		CA265_RS21730	0.18	+1.0
5,344,118	-		CA265_RS21730	0.27	+0.3
5,344,206	+		CA265_RS21730	0.36	+0.4
5,344,207	-		CA265_RS21730	0.36	+0.4
5,344,278	-		CA265_RS21730	0.44	+0.9
5,344,292	+		CA265_RS21730	0.45	-0.8
5,344,296	+		CA265_RS21730	0.46	+0.8
5,344,305	+		CA265_RS21730	0.47	-0.9
5,344,401	+		CA265_RS21730	0.57	-0.1
5,344,402	-		CA265_RS21730	0.57	-0.4
5,344,409	-		CA265_RS21730	0.58	-1.0
5,344,409	-		CA265_RS21730	0.58	-1.7
5,344,489	-		CA265_RS21730	0.67	+0.2
5,344,489	-		CA265_RS21730	0.67	-0.7
5,344,545	+		CA265_RS21730	0.73	+0.0
5,344,589	-		CA265_RS21730	0.77	-0.9