Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20120

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
4,974,636	-		CA265_RS20115	0.40	+1.8
4,974,636	-				+3.4
4,974,721	-		CA265_RS20115	0.49	+1.9
4,974,722	+		CA265_RS20115	0.49	+1.5
4,974,758	+		CA265_RS20115	0.52	+1.2
4,974,759	-		CA265_RS20115	0.52	+1.4
4,974,887	+		CA265_RS20115	0.65	+1.4
4,974,905	+		CA265_RS20115	0.67	+0.8
4,974,920	-		CA265_RS20115	0.69	+0.6
4,974,934	+		CA265_RS20115	0.70	-0.5
4,975,008	+		CA265_RS20115	0.78	+0.8
4,975,038	+		CA265_RS20115	0.81	+1.5
4,975,038	+		CA265_RS20115	0.81	+0.6
4,975,039	-		CA265_RS20115	0.81	+1.4
4,975,039	-		CA265_RS20115	0.81	+1.3
4,975,057	+		CA265_RS20115	0.83	-1.6
4,975,058	-		CA265_RS20115	0.83	+1.6
4,975,101	-		CA265_RS20115	0.87	+0.8
4,975,105	+		CA265_RS20115	0.88	-0.5
4,975,106	-		CA265_RS20115	0.88	+1.3
4,975,146	+				-2.1
4,975,167	-				+0.4
4,975,259	-				+0.1
4,975,272	+				-1.3
4,975,272	+				-1.7
4,975,272	+				+0.5
4,975,273	-				-1.0
4,975,382	+				+1.1
4,975,395	-				-0.3
4,975,395	-				-0.2
4,975,424	+				-1.2
4,975,425	-				-0.7
4,975,471	-				+0.2
4,975,493	-				+0.2
4,975,605	+		CA265_RS20120	0.22	-2.4
4,975,608	+		CA265_RS20120	0.22	-1.3
4,975,609	-		CA265_RS20120	0.22	-2.7
4,975,619	-		CA265_RS20120	0.24	-1.7
4,975,623	+		CA265_RS20120	0.25	-2.0
4,975,623	+		CA265_RS20120	0.25	-1.2
4,975,623	+		CA265_RS20120	0.25	-4.1
4,975,624	-		CA265_RS20120	0.25	-2.7
4,975,628	+		CA265_RS20120	0.25	+0.1
4,975,628	+		CA265_RS20120	0.25	-2.3
4,975,630	+		CA265_RS20120	0.26	-1.6
4,975,677	-		CA265_RS20120	0.33	-1.1
4,975,752	+		CA265_RS20120	0.45	-4.4
4,975,752	+		CA265_RS20120	0.45	-0.2
4,975,778	+		CA265_RS20120	0.50	-1.1
4,975,858	+		CA265_RS20120	0.62	-1.4
4,975,859	-		CA265_RS20120	0.62	-1.5
4,975,930	+		CA265_RS20120	0.74	-1.8
4,975,961	+		CA265_RS20120	0.79	-0.7
4,975,962	-		CA265_RS20120	0.79	-0.9
4,975,968	+		CA265_RS20120	0.80	-0.3
4,976,018	+		CA265_RS20120	0.88	-2.8
4,976,107	+				-0.6
4,976,139	+				+0.1
4,976,139	+				-0.7
4,976,140	-				+1.4
4,976,217	+				-0.5
4,976,217	+				+1.1
4,976,252	-				-0.7
4,976,272	+		CA265_RS20125	0.11	+1.4
4,976,309	+		CA265_RS20125	0.13	-0.6
4,976,331	+		CA265_RS20125	0.14	+1.1
4,976,331	+		CA265_RS20125	0.14	+0.7
4,976,332	-		CA265_RS20125	0.14	-0.6
4,976,380	+		CA265_RS20125	0.17	+0.0
4,976,381	-		CA265_RS20125	0.17	+0.3
4,976,394	+		CA265_RS20125	0.18	-0.0
4,976,394	+		CA265_RS20125	0.18	+1.8
4,976,439	+		CA265_RS20125	0.20	-0.3
4,976,445	-		CA265_RS20125	0.20	-0.6
4,976,492	+		CA265_RS20125	0.23	-0.2
4,976,493	-		CA265_RS20125	0.23	+1.2
4,976,535	+		CA265_RS20125	0.26	+0.0
4,976,535	+		CA265_RS20125	0.26	-1.0
4,976,537	+		CA265_RS20125	0.26	+0.8
4,976,537	+		CA265_RS20125	0.26	+1.6
4,976,537	+		CA265_RS20125	0.26	-0.2
4,976,726	+		CA265_RS20125	0.37	+1.1
4,976,729	+		CA265_RS20125	0.37	-0.8
4,976,755	-		CA265_RS20125	0.38	+0.6
4,976,801	-		CA265_RS20125	0.41	-1.0
4,976,919	-		CA265_RS20125	0.48	+0.5
4,976,937	-		CA265_RS20125	0.49	-0.0
4,976,996	-		CA265_RS20125	0.52	+1.0
4,977,001	-		CA265_RS20125	0.52	+0.1
4,977,002	-		CA265_RS20125	0.52	+0.3
4,977,044	-		CA265_RS20125	0.55	-0.7
4,977,044	-		CA265_RS20125	0.55	+0.4
4,977,045	+		CA265_RS20125	0.55	-0.6
4,977,046	-		CA265_RS20125	0.55	+0.5
4,977,088	+		CA265_RS20125	0.57	+1.0
4,977,092	+		CA265_RS20125	0.58	+0.4