Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18310

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
4,560,631	-		CA265_RS18300	0.66	-1.7
4,560,872	+		CA265_RS18300	0.89	-2.1
4,560,916	-				-0.0
4,560,929	+				-1.3
4,560,929	+				-0.7
4,560,930	-				+0.3
4,560,934	-				-1.0
4,560,949	+				-1.7
4,560,952	+				-3.3
4,560,953	-				-1.0
4,560,958	-				-2.3
4,560,984	-				-1.6
4,560,990	-				+0.4
4,560,995	-				+1.9
4,561,012	-				-0.9
4,561,015	-				+1.8
4,561,049	+				-1.0
4,561,050	-				-0.4
4,561,092	-				+1.0
4,561,208	-		CA265_RS18305	0.20	-0.1
4,561,217	-		CA265_RS18305	0.23	-1.2
4,561,227	-		CA265_RS18305	0.27	+1.3
4,561,244	+		CA265_RS18305	0.33	-1.0
4,561,270	-		CA265_RS18305	0.42	-1.1
4,561,275	-		CA265_RS18305	0.44	-0.5
4,561,285	-		CA265_RS18305	0.47	-0.2
4,561,293	+		CA265_RS18305	0.50	-1.8
4,561,294	-		CA265_RS18305	0.50	-0.8
4,561,294	-		CA265_RS18305	0.50	+0.4
4,561,371	-		CA265_RS18305	0.78	+1.1
4,561,491	-				-2.9
4,561,503	-				-1.0
4,561,507	+				+1.4
4,561,569	+				-0.0
4,561,570	-				+0.2
4,561,570	-				-0.1
4,561,679	-		CA265_RS18310	0.18	+1.9
4,561,767	-		CA265_RS18310	0.33	+1.9
4,561,821	-		CA265_RS18310	0.42	+1.6
4,561,841	-		CA265_RS18310	0.45	+0.7
4,561,891	+		CA265_RS18310	0.53	-0.3
4,561,954	-		CA265_RS18310	0.64	+1.7
4,562,050	-		CA265_RS18310	0.80	+1.3
4,562,061	+		CA265_RS18310	0.82	+0.9
4,562,066	+		CA265_RS18310	0.82	+1.0
4,562,127	+				+0.0
4,562,128	-				+0.7
4,562,128	-				+1.8
4,562,128	-				+0.8
4,562,133	-				+2.0
4,562,253	-				-0.3
4,562,253	-				-0.4
4,562,316	+				+0.6
4,562,317	-				-0.6
4,562,352	+				-0.9
4,562,460	-				-0.8
4,562,462	-				+1.3
4,562,597	+				-1.6
4,562,597	+				-0.8
4,562,633	+				+1.3
4,562,659	-		CA265_RS18315	0.11	-1.0
4,562,659	-		CA265_RS18315	0.11	-1.0
4,562,662	+		CA265_RS18315	0.11	+0.7
4,562,662	+		CA265_RS18315	0.11	-1.5
4,562,663	-		CA265_RS18315	0.11	-1.0
4,562,663	-		CA265_RS18315	0.11	-1.8
4,562,840	-		CA265_RS18315	0.34	-0.7
4,562,840	-		CA265_RS18315	0.34	-0.6
4,562,840	-		CA265_RS18315	0.34	+0.7
4,562,881	-		CA265_RS18315	0.39	-0.9
4,562,883	+		CA265_RS18315	0.39	-1.0
4,562,884	-		CA265_RS18315	0.39	-0.5
4,562,982	-		CA265_RS18315	0.52	-1.4
4,562,998	+		CA265_RS18315	0.54	-0.9
4,563,036	+		CA265_RS18315	0.59	-1.0