Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16525

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
4,156,550	-		CA265_RS16520	0.60	-2.1
4,156,680	+		CA265_RS16520	0.71	-1.1
4,156,681	-		CA265_RS16520	0.71	-1.7
4,156,681	-		CA265_RS16520	0.71	+2.0
4,156,691	+		CA265_RS16520	0.72	+0.4
4,156,806	+		CA265_RS16520	0.82	+0.2
4,156,807	-		CA265_RS16520	0.82	+0.7
4,156,847	+		CA265_RS16520	0.86	-1.0
4,156,860	-		CA265_RS16520	0.87	-0.6
4,156,860	-		CA265_RS16520	0.87	+0.3
4,156,864	-		CA265_RS16520	0.87	-0.9
4,156,903	+				+0.3
4,156,947	+				+0.3
4,157,007	+				+0.7
4,157,008	-				-1.8
4,157,008	-				-0.6
4,157,042	-				+0.1
4,157,048	-				-0.3
4,157,048	-				-0.3
4,157,051	+				+0.2
4,157,051	+				-1.0
4,157,052	-				-0.4
4,157,055	+				-0.3
4,157,082	-				+0.4
4,157,084	+				+0.5
4,157,085	-				-0.9
4,157,086	+				+0.2
4,157,152	-				-0.3
4,157,366	-				-2.5
4,157,371	+				-1.3
4,157,372	-				+0.1
4,157,372	-				-0.6
4,157,373	+				+1.5
4,157,374	-				-1.4
4,157,499	+				+0.9
4,157,499	+				+1.0
4,157,583	-				-1.0
4,157,583	-				+0.6
4,157,607	+				+0.9
4,157,607	+				+0.3
4,157,607	+				+1.2
4,157,638	+		CA265_RS16525	0.12	+0.8
4,157,748	+		CA265_RS16525	0.22	+1.4
4,157,784	-		CA265_RS16525	0.25	-0.1
4,157,791	+		CA265_RS16525	0.26	+0.9
4,157,791	+		CA265_RS16525	0.26	+2.3
4,157,793	+		CA265_RS16525	0.26	+0.8
4,157,837	+		CA265_RS16525	0.30	+1.1
4,157,883	+		CA265_RS16525	0.34	+0.2
4,157,926	+		CA265_RS16525	0.38	-1.3
4,158,004	+		CA265_RS16525	0.45	+1.3
4,158,025	+		CA265_RS16525	0.46	-1.2
4,158,026	-		CA265_RS16525	0.47	+0.0
4,158,026	-		CA265_RS16525	0.47	-0.3
4,158,236	+		CA265_RS16525	0.65	+2.8
4,158,290	+		CA265_RS16525	0.70	+2.5
4,158,293	-		CA265_RS16525	0.70	+0.5
4,158,293	-		CA265_RS16525	0.70	-0.0
4,158,295	-		CA265_RS16525	0.70	-0.8
4,158,301	-		CA265_RS16525	0.71	+0.2
4,158,451	+		CA265_RS16525	0.84	+2.4
4,158,459	-		CA265_RS16525	0.85	-0.4
4,158,504	-		CA265_RS16525	0.89	+0.1
4,158,582	+				+1.9
4,158,628	+				+0.6
4,158,643	-				+1.5
4,158,649	+				+0.2
4,158,652	-				-0.2
4,158,652	-				-0.2
4,158,652	-				-0.1
4,158,673	-				-0.9
4,158,702	-				-0.7
4,158,757	-		CA265_RS16530	0.18	-0.6
4,158,762	+		CA265_RS16530	0.18	+1.6
4,158,814	-		CA265_RS16530	0.26	-1.2
4,158,814	-		CA265_RS16530	0.26	+0.1
4,158,815	+		CA265_RS16530	0.26	+0.7
4,158,849	+		CA265_RS16530	0.31	-0.2
4,158,849	+		CA265_RS16530	0.31	+1.2
4,158,849	+		CA265_RS16530	0.31	-0.4
4,158,849	+		CA265_RS16530	0.31	-1.9
4,158,850	-		CA265_RS16530	0.31	-0.6
4,158,876	+		CA265_RS16530	0.34	-0.6
4,158,890	+		CA265_RS16530	0.36	-0.0
4,158,891	-		CA265_RS16530	0.36	+0.5
4,158,891	-		CA265_RS16530	0.36	-0.8
4,158,891	-		CA265_RS16530	0.36	-1.2
4,158,911	+		CA265_RS16530	0.39	+0.5
4,158,977	-		CA265_RS16530	0.48	-0.9
4,158,977	-		CA265_RS16530	0.48	+0.6
4,158,990	+		CA265_RS16530	0.50	+0.6
4,158,992	+		CA265_RS16530	0.51	+0.7
4,159,004	+		CA265_RS16530	0.52	+0.5
4,159,029	+		CA265_RS16530	0.56	-0.0
4,159,038	+		CA265_RS16530	0.57	+0.9
4,159,039	-		CA265_RS16530	0.57	-0.2
4,159,050	-		CA265_RS16530	0.59	-0.7
4,159,074	+		CA265_RS16530	0.62	+1.0
4,159,112	+		CA265_RS16530	0.67	+0.6
4,159,112	+		CA265_RS16530	0.67	+1.3
4,159,153	+		CA265_RS16530	0.73	-1.3
4,159,154	-		CA265_RS16530	0.73	-0.6
4,159,157	-		CA265_RS16530	0.74	-2.1
4,159,164	+		CA265_RS16530	0.75	+0.7
4,159,177	+		CA265_RS16530	0.76	+0.2
4,159,197	+		CA265_RS16530	0.79	-0.3
4,159,218	-		CA265_RS16530	0.82	-0.4
4,159,218	-		CA265_RS16530	0.82	-0.6
4,159,274	+				+0.5
4,159,341	-				-1.3
4,159,354	+				+1.7
4,159,354	+				-1.2
4,159,363	+				+0.7
4,159,408	+				+0.7
4,159,564	-		CA265_RS16535	0.21	+1.2
4,159,568	-		CA265_RS16535	0.22	-0.2
4,159,579	+		CA265_RS16535	0.23	+1.8
4,159,593	-		CA265_RS16535	0.24	+0.3