Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13185

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS13180 and CA265_RS13185 are separated by 133 nucleotidesCA265_RS13185 and CA265_RS13190 are separated by 14 nucleotidesCA265_RS13190 and CA265_RS13195 are separated by 60 nucleotides CA265_RS13180: CA265_RS13180 - cysteine desulfurase, at 3,280,743 to 3,281,891 _RS13180 CA265_RS13185: CA265_RS13185 - phosphoglucosamine mutase, at 3,282,025 to 3,283,410 _RS13185 CA265_RS13190: CA265_RS13190 - hypothetical protein, at 3,283,425 to 3,283,688 _RS13190 CA265_RS13195: CA265_RS13195 - SAM-dependent methyltransferase, at 3,283,749 to 3,284,480 _RS13195 Position (kb) 3282 3283 3284Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3281.944 kb on - strandat 3281.963 kb on - strandat 3282.035 kb on - strandat 3282.038 kb on - strandat 3283.456 kb on + strand, within CA265_RS13190at 3283.456 kb on + strand, within CA265_RS13190at 3283.491 kb on + strand, within CA265_RS13190at 3283.492 kb on - strand, within CA265_RS13190at 3283.508 kb on + strand, within CA265_RS13190at 3283.509 kb on - strand, within CA265_RS13190at 3283.547 kb on - strand, within CA265_RS13190at 3283.547 kb on - strand, within CA265_RS13190at 3283.578 kb on - strand, within CA265_RS13190at 3283.589 kb on + strand, within CA265_RS13190at 3283.652 kb on + strand, within CA265_RS13190at 3283.692 kb on + strandat 3283.704 kb on + strandat 3283.713 kb on - strandat 3283.714 kb on + strandat 3283.714 kb on + strandat 3283.791 kb on + strandat 3283.791 kb on + strandat 3284.056 kb on - strand, within CA265_RS13195at 3284.085 kb on - strand, within CA265_RS13195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml
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3,281,944 - -2.6
3,281,963 - -0.5
3,282,035 - +0.4
3,282,038 - +2.2
3,283,456 + CA265_RS13190 0.12 +0.9
3,283,456 + CA265_RS13190 0.12 +2.3
3,283,491 + CA265_RS13190 0.25 +1.9
3,283,492 - CA265_RS13190 0.25 +0.4
3,283,508 + CA265_RS13190 0.31 +1.2
3,283,509 - CA265_RS13190 0.32 -0.3
3,283,547 - CA265_RS13190 0.46 -0.1
3,283,547 - CA265_RS13190 0.46 -0.2
3,283,578 - CA265_RS13190 0.58 +0.1
3,283,589 + CA265_RS13190 0.62 +1.9
3,283,652 + CA265_RS13190 0.86 +2.7
3,283,692 + +0.7
3,283,704 + +1.2
3,283,713 - +2.3
3,283,714 + +1.7
3,283,714 + +2.1
3,283,791 + +4.4
3,283,791 + +5.3
3,284,056 - CA265_RS13195 0.42 +4.8
3,284,085 - CA265_RS13195 0.46 +6.3

Or see this region's nucleotide sequence