Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12670

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
3,158,478	+		CA265_RS12660	0.46	+1.2
3,158,478	+		CA265_RS12660	0.46	-0.4
3,158,478	+		CA265_RS12660	0.46	+0.2
3,158,479	-		CA265_RS12660	0.46	+1.8
3,158,518	+		CA265_RS12660	0.52	+0.4
3,158,520	+		CA265_RS12660	0.52	+0.7
3,158,568	+		CA265_RS12660	0.60	+0.1
3,158,601	-		CA265_RS12660	0.64	-0.4
3,158,609	+		CA265_RS12660	0.66	+1.6
3,158,619	+		CA265_RS12660	0.67	+1.4
3,158,695	+		CA265_RS12660	0.78	+2.1
3,158,695	+		CA265_RS12660	0.78	-0.4
3,158,701	+		CA265_RS12660	0.79	+1.2
3,158,714	+		CA265_RS12660	0.81	+1.1
3,158,715	-		CA265_RS12660	0.81	-1.7
3,158,770	+		CA265_RS12660	0.90	+1.6
3,158,771	-		CA265_RS12660	0.90	+0.1
3,158,843	+				+1.5
3,158,872	+				+1.1
3,158,873	-				+0.2
3,158,881	+				+1.3
3,158,947	+				+2.8
3,159,001	+				+1.3
3,159,019	+				+1.7
3,159,023	+				+1.1
3,159,054	-				+1.9
3,159,087	-				+1.1
3,159,140	+		CA265_RS12665	0.29	+1.8
3,159,276	+				+1.9
3,159,289	+				+1.6
3,159,333	+				+2.2
3,159,334	-				+1.1
3,159,356	+				-0.4
3,159,476	+		CA265_RS12670	0.13	+1.0
3,159,520	+		CA265_RS12670	0.28	+0.8
3,159,521	-		CA265_RS12670	0.29	+1.2
3,159,527	+		CA265_RS12670	0.31	+0.2
3,159,597	+		CA265_RS12670	0.55	-0.0
3,159,599	+		CA265_RS12670	0.55	+0.4
3,159,751	+				-1.1
3,159,757	-				+1.0
3,159,856	+				-0.6
3,159,912	+				+0.5
3,159,913	-				+0.3
3,159,960	-				+0.8
3,160,017	-				-0.6
3,160,055	+				-0.3
3,160,058	+				+0.7
3,160,065	+				-1.5
3,160,129	-				+0.8
3,160,132	+				+0.6
3,160,149	-				-1.3
3,160,151	-				+0.9
3,160,153	+				+1.1
3,160,153	+				-0.8
3,160,201	+		CA265_RS12675	0.25	+0.1
3,160,205	+		CA265_RS12675	0.28	+0.8
3,160,206	-		CA265_RS12675	0.29	-0.9
3,160,281	-		CA265_RS12675	0.83	-0.4
3,160,293	+				-2.0
3,160,312	+				-0.7
3,160,368	+				-1.0
3,160,372	+				-1.9
3,160,390	+				+0.4
3,160,499	+				-0.2
3,160,500	-				+0.5
3,160,503	-				-0.4
3,160,503	-				+2.2
3,160,536	-				+0.2
3,160,536	-				+0.0
3,160,653	-		CA265_RS12680	0.17	+1.4
3,160,656	+		CA265_RS12680	0.17	-0.5
3,160,683	+		CA265_RS12680	0.20	-0.8
3,160,692	+		CA265_RS12680	0.21	-0.8
3,160,699	+		CA265_RS12680	0.22	-0.1
3,160,700	-		CA265_RS12680	0.22	+0.2