Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08825

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
2,206,748	-		CA265_RS08815	0.57	-0.2
2,206,775	-		CA265_RS08815	0.64	+0.2
2,206,780	-		CA265_RS08815	0.66	+1.0
2,206,857	+		CA265_RS08815	0.87	-0.3
2,206,874	-				+0.3
2,206,974	+				-1.1
2,207,001	+				-1.1
2,207,001	+				-0.6
2,207,002	-				-2.0
2,207,063	+		CA265_RS08820	0.14	-1.3
2,207,064	-		CA265_RS08820	0.14	-0.7
2,207,081	+		CA265_RS08820	0.16	-1.7
2,207,081	+		CA265_RS08820	0.16	-1.2
2,207,097	-		CA265_RS08820	0.18	-0.9
2,207,167	-		CA265_RS08820	0.27	-1.1
2,207,173	-		CA265_RS08820	0.28	-0.7
2,207,279	+		CA265_RS08820	0.41	-1.6
2,207,498	+		CA265_RS08820	0.69	-1.6
2,207,532	+		CA265_RS08820	0.73	-2.0
2,207,554	+		CA265_RS08820	0.76	+0.2
2,207,587	+		CA265_RS08820	0.80	-1.5
2,207,588	-		CA265_RS08820	0.81	-0.8
2,207,588	-		CA265_RS08820	0.81	-2.5
2,207,604	+		CA265_RS08820	0.83	-1.7
2,207,834	+		CA265_RS08825	0.10	-0.9
2,207,947	+		CA265_RS08825	0.22	-2.1
2,208,011	+		CA265_RS08825	0.29	-1.5
2,208,012	-				+1.5
2,208,060	+		CA265_RS08825	0.35	-3.6
2,208,060	+		CA265_RS08825	0.35	-1.3
2,208,061	-		CA265_RS08825	0.35	-0.9
2,208,069	-				-0.5
2,208,119	-		CA265_RS08825	0.41	+0.8
2,208,136	+		CA265_RS08825	0.43	-0.4
2,208,137	-		CA265_RS08825	0.43	-1.6
2,208,249	+		CA265_RS08825	0.55	-1.0
2,208,260	+		CA265_RS08825	0.56	-2.6
2,208,260	+		CA265_RS08825	0.56	-1.2
2,208,260	+		CA265_RS08825	0.56	-1.3
2,208,261	-		CA265_RS08825	0.56	-1.0
2,208,263	+		CA265_RS08825	0.56	-1.2
2,208,264	-		CA265_RS08825	0.56	-0.7
2,208,294	-		CA265_RS08825	0.60	-1.0
2,208,371	+		CA265_RS08825	0.68	-1.1
2,208,382	+		CA265_RS08825	0.69	-1.9
2,208,416	+		CA265_RS08825	0.73	-1.6
2,208,416	+		CA265_RS08825	0.73	-1.2
2,208,417	-		CA265_RS08825	0.73	-1.7
2,208,417	-		CA265_RS08825	0.73	-1.2
2,208,508	+		CA265_RS08825	0.83	+1.1
2,208,551	+		CA265_RS08825	0.87	-1.2
2,208,673	+				+0.2
2,208,758	+				-0.2
2,208,758	+				-0.6
2,208,814	+				+1.5
2,208,815	-				-0.3
2,208,848	-		CA265_RS08830	0.11	-1.0
2,208,892	+		CA265_RS08830	0.20	+0.1
2,208,892	+		CA265_RS08830	0.20	+0.1
2,208,893	-		CA265_RS08830	0.20	+0.6
2,208,902	-		CA265_RS08830	0.22	-0.2
2,208,904	-		CA265_RS08830	0.22	-0.6
2,208,907	+		CA265_RS08830	0.23	+0.1
2,208,910	+		CA265_RS08830	0.23	-0.6
2,208,910	+		CA265_RS08830	0.23	-0.1
2,208,920	+		CA265_RS08830	0.25	-0.2
2,208,927	+		CA265_RS08830	0.26	-0.9
2,208,927	+		CA265_RS08830	0.26	+2.0
2,208,946	-		CA265_RS08830	0.30	-0.3
2,208,975	+		CA265_RS08830	0.36	+2.1
2,208,976	-		CA265_RS08830	0.36	-1.2
2,209,001	-		CA265_RS08830	0.41	-0.2
2,209,021	+		CA265_RS08830	0.44	+0.2
2,209,021	+		CA265_RS08830	0.44	+0.4
2,209,054	-		CA265_RS08830	0.51	-0.7
2,209,064	+		CA265_RS08830	0.53	+0.3
2,209,153	+		CA265_RS08830	0.70	-0.2
2,209,249	-		CA265_RS08830	0.88	+0.3
2,209,275	-				-0.0
2,209,310	+				-0.3
2,209,310	+				+0.4
2,209,329	+				+0.3
2,209,444	+				+0.3
2,209,452	+				-0.5
2,209,664	+		CA265_RS08835	0.36	+0.5