Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04945 and CA265_RS04950 are separated by 124 nucleotides CA265_RS04950 and CA265_RS04955 are separated by 10 nucleotides CA265_RS04955 and CA265_RS04960 are separated by 229 nucleotides
CA265_RS04945: CA265_RS04945 - bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase, at 1,177,210 to 1,179,669
_RS04945
CA265_RS04950: CA265_RS04950 - hypothetical protein, at 1,179,794 to 1,180,384
_RS04950
CA265_RS04955: CA265_RS04955 - arsenate reductase (glutaredoxin), at 1,180,395 to 1,180,739
_RS04955
CA265_RS04960: CA265_RS04960 - hypothetical protein, at 1,180,969 to 1,181,463
_RS04960
Position (kb) 1179
1180
1181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1179.668 kb on - strand at 1179.696 kb on - strand at 1179.696 kb on - strand at 1179.697 kb on + strand at 1179.698 kb on - strand at 1179.729 kb on + strand at 1179.729 kb on + strand at 1179.749 kb on - strand at 1179.751 kb on - strand at 1179.768 kb on - strand at 1179.820 kb on - strand at 1179.853 kb on - strand, within CA265_RS04950 at 1179.918 kb on + strand, within CA265_RS04950 at 1179.926 kb on - strand, within CA265_RS04950 at 1179.975 kb on + strand, within CA265_RS04950 at 1180.050 kb on - strand, within CA265_RS04950 at 1180.069 kb on + strand, within CA265_RS04950 at 1180.110 kb on + strand, within CA265_RS04950 at 1180.309 kb on + strand, within CA265_RS04950 at 1180.310 kb on - strand, within CA265_RS04950 at 1180.359 kb on + strand at 1180.406 kb on - strand at 1180.406 kb on - strand at 1180.406 kb on - strand at 1180.406 kb on - strand at 1180.408 kb on - strand at 1180.408 kb on - strand at 1180.453 kb on + strand, within CA265_RS04955 at 1180.453 kb on + strand, within CA265_RS04955 at 1180.485 kb on + strand, within CA265_RS04955 at 1180.485 kb on + strand, within CA265_RS04955 at 1180.485 kb on + strand, within CA265_RS04955 at 1180.489 kb on - strand, within CA265_RS04955 at 1180.658 kb on - strand, within CA265_RS04955 at 1180.673 kb on + strand, within CA265_RS04955 at 1180.742 kb on + strand at 1180.743 kb on - strand at 1180.761 kb on + strand at 1180.801 kb on + strand at 1180.802 kb on - strand at 1180.897 kb on + strand at 1180.897 kb on + strand at 1180.960 kb on + strand at 1180.989 kb on + strand at 1181.073 kb on + strand, within CA265_RS04960 at 1181.073 kb on + strand, within CA265_RS04960 at 1181.073 kb on + strand, within CA265_RS04960 at 1181.096 kb on - strand, within CA265_RS04960 at 1181.153 kb on - strand, within CA265_RS04960 at 1181.251 kb on - strand, within CA265_RS04960 at 1181.321 kb on - strand, within CA265_RS04960 at 1181.328 kb on - strand, within CA265_RS04960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 1,179,668 - -0.1 1,179,696 - +0.5 1,179,696 - +1.5 1,179,697 + +0.4 1,179,698 - -1.8 1,179,729 + +0.5 1,179,729 + +1.7 1,179,749 - +0.1 1,179,751 - +0.1 1,179,768 - -0.7 1,179,820 - -2.0 1,179,853 - CA265_RS04950 0.10 -2.4 1,179,918 + CA265_RS04950 0.21 -1.7 1,179,926 - CA265_RS04950 0.22 -0.8 1,179,975 + CA265_RS04950 0.31 -2.9 1,180,050 - CA265_RS04950 0.43 -1.6 1,180,069 + CA265_RS04950 0.47 -2.8 1,180,110 + CA265_RS04950 0.53 +2.1 1,180,309 + CA265_RS04950 0.87 -2.5 1,180,310 - CA265_RS04950 0.87 +0.8 1,180,359 + -1.3 1,180,406 - -2.0 1,180,406 - +0.1 1,180,406 - -0.7 1,180,406 - -0.3 1,180,408 - -1.9 1,180,408 - -0.6 1,180,453 + CA265_RS04955 0.17 +0.1 1,180,453 + CA265_RS04955 0.17 +0.5 1,180,485 + CA265_RS04955 0.26 -0.1 1,180,485 + CA265_RS04955 0.26 -0.6 1,180,485 + CA265_RS04955 0.26 +0.5 1,180,489 - CA265_RS04955 0.27 -0.8 1,180,658 - CA265_RS04955 0.76 -1.5 1,180,673 + CA265_RS04955 0.81 +1.3 1,180,742 + +0.1 1,180,743 - -1.0 1,180,761 + -0.2 1,180,801 + -0.4 1,180,802 - -0.6 1,180,897 + +0.3 1,180,897 + +0.6 1,180,960 + +0.2 1,180,989 + -0.4 1,181,073 + CA265_RS04960 0.21 +0.1 1,181,073 + CA265_RS04960 0.21 +0.7 1,181,073 + CA265_RS04960 0.21 +1.1 1,181,096 - CA265_RS04960 0.26 -0.4 1,181,153 - CA265_RS04960 0.37 +0.6 1,181,251 - CA265_RS04960 0.57 -0.4 1,181,321 - CA265_RS04960 0.71 -0.6 1,181,328 - CA265_RS04960 0.73 +0.6
Or see this region's nucleotide sequence