Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04640

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.003 mg/ml
1,108,245	+		CA265_RS04635	0.69	-1.6
1,108,279	+		CA265_RS04635	0.70	-0.1
1,108,352	+		CA265_RS04635	0.72	-1.4
1,108,357	+		CA265_RS04635	0.73	-4.0
1,108,357	+		CA265_RS04635	0.73	-3.4
1,108,466	-		CA265_RS04635	0.76	-0.5
1,108,472	-		CA265_RS04635	0.76	-0.6
1,108,550	+		CA265_RS04635	0.79	-1.8
1,108,550	+		CA265_RS04635	0.79	-0.9
1,108,557	-		CA265_RS04635	0.79	-1.7
1,108,616	+		CA265_RS04635	0.81	+0.0
1,108,651	+		CA265_RS04635	0.82	-0.1
1,108,685	+		CA265_RS04635	0.83	-1.9
1,108,685	+		CA265_RS04635	0.83	-2.3
1,108,728	-		CA265_RS04635	0.84	-1.0
1,108,781	+		CA265_RS04635	0.86	-1.9
1,108,781	+		CA265_RS04635	0.86	-3.2
1,108,787	-		CA265_RS04635	0.86	-2.4
1,108,787	-		CA265_RS04635	0.86	-0.9
1,108,796	+		CA265_RS04635	0.87	-2.2
1,108,796	+		CA265_RS04635	0.87	-2.4
1,108,808	-		CA265_RS04635	0.87	-1.0
1,108,900	-		CA265_RS04635	0.90	-1.8
1,108,904	+				-2.6
1,108,904	+				-0.6
1,108,904	+				-1.2
1,109,013	-				-0.0
1,109,013	-				-0.8
1,109,068	+				-0.6
1,109,120	+				-2.7
1,109,190	-				-2.3
1,109,308	+				-1.5
1,109,308	+				-2.0
1,109,309	-				-1.5
1,109,309	-				-2.1
1,109,324	+				-1.1
1,109,325	-				-2.2
1,109,325	-				-2.5
1,109,396	-		CA265_RS04640	0.14	-1.8
1,109,441	-		CA265_RS04640	0.18	-1.4
1,109,493	+		CA265_RS04640	0.23	-0.1
1,109,575	+		CA265_RS04640	0.31	-0.6
1,109,626	+		CA265_RS04640	0.35	-1.5
1,109,661	+		CA265_RS04640	0.38	+1.0
1,109,673	-		CA265_RS04640	0.40	-0.8
1,109,802	+		CA265_RS04640	0.51	-1.4
1,109,807	+		CA265_RS04640	0.52	-1.3
1,109,807	+		CA265_RS04640	0.52	-2.4
1,109,921	+		CA265_RS04640	0.62	-0.6
1,109,968	-		CA265_RS04640	0.67	-1.5
1,109,968	-		CA265_RS04640	0.67	-2.0
1,110,103	+		CA265_RS04640	0.79	-1.4
1,110,281	-				-2.3
1,110,365	-				-3.9
1,110,422	+				-3.3
1,110,443	-				-1.0
1,110,443	-				-1.3
1,110,592	-		CA265_RS04645	0.20	-1.2
1,110,607	-		CA265_RS04645	0.21	-0.5
1,110,645	+		CA265_RS04645	0.24	-2.6
1,110,646	-				+0.6
1,110,747	+		CA265_RS04645	0.32	-0.6
1,110,820	+		CA265_RS04645	0.38	-0.5
1,110,821	-		CA265_RS04645	0.38	-0.4
1,110,879	+		CA265_RS04645	0.43	-1.0
1,110,900	-		CA265_RS04645	0.44	-1.0
1,110,900	-		CA265_RS04645	0.44	-2.6
1,110,954	-		CA265_RS04645	0.49	-0.4
1,110,976	-		CA265_RS04645	0.50	-0.3
1,110,981	-		CA265_RS04645	0.51	-2.3
1,111,106	+		CA265_RS04645	0.61	-0.9
1,111,151	-		CA265_RS04645	0.64	-1.4
1,111,177	+		CA265_RS04645	0.66	-1.0
1,111,177	+		CA265_RS04645	0.66	-0.7
1,111,178	-		CA265_RS04645	0.66	-1.6
1,111,184	+		CA265_RS04645	0.67	-0.7
1,111,212	+		CA265_RS04645	0.69	+0.2
1,111,234	+		CA265_RS04645	0.71	-2.0
1,111,253	+		CA265_RS04645	0.72	-1.1
1,111,254	-		CA265_RS04645	0.72	-1.6