Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03985 and CA265_RS03990 overlap by 1 nucleotides CA265_RS03990 and CA265_RS03995 are separated by 32 nucleotides
CA265_RS03985: CA265_RS03985 - hypothetical protein, at 951,332 to 953,290
_RS03985
CA265_RS03990: CA265_RS03990 - hypothetical protein, at 953,290 to 954,990
_RS03990
CA265_RS03995: CA265_RS03995 - hypothetical protein, at 955,023 to 956,654
_RS03995
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 952.317 kb on - strand, within CA265_RS03985 at 952.333 kb on + strand, within CA265_RS03985 at 952.353 kb on + strand, within CA265_RS03985 at 952.388 kb on - strand, within CA265_RS03985 at 952.412 kb on - strand, within CA265_RS03985 at 952.414 kb on + strand, within CA265_RS03985 at 952.415 kb on - strand, within CA265_RS03985 at 952.436 kb on - strand, within CA265_RS03985 at 952.441 kb on - strand, within CA265_RS03985 at 952.478 kb on - strand, within CA265_RS03985 at 952.478 kb on - strand, within CA265_RS03985 at 952.481 kb on + strand, within CA265_RS03985 at 952.610 kb on + strand, within CA265_RS03985 at 952.611 kb on - strand, within CA265_RS03985 at 952.660 kb on + strand, within CA265_RS03985 at 952.669 kb on + strand, within CA265_RS03985 at 952.669 kb on + strand, within CA265_RS03985 at 952.742 kb on - strand, within CA265_RS03985 at 952.759 kb on - strand, within CA265_RS03985 at 952.812 kb on - strand at 952.853 kb on + strand, within CA265_RS03985 at 952.854 kb on - strand, within CA265_RS03985 at 952.856 kb on - strand, within CA265_RS03985 at 952.859 kb on - strand, within CA265_RS03985 at 952.917 kb on + strand, within CA265_RS03985 at 952.929 kb on + strand, within CA265_RS03985 at 952.955 kb on - strand, within CA265_RS03985 at 952.992 kb on - strand, within CA265_RS03985 at 953.041 kb on + strand, within CA265_RS03985 at 953.049 kb on + strand, within CA265_RS03985 at 953.050 kb on - strand, within CA265_RS03985 at 953.084 kb on + strand, within CA265_RS03985 at 953.088 kb on + strand, within CA265_RS03985 at 953.089 kb on - strand, within CA265_RS03985 at 953.089 kb on - strand, within CA265_RS03985 at 953.097 kb on + strand at 953.202 kb on + strand at 953.202 kb on + strand at 953.249 kb on - strand at 953.252 kb on + strand at 953.252 kb on + strand at 953.253 kb on - strand at 953.257 kb on + strand at 953.258 kb on - strand at 953.321 kb on + strand at 953.325 kb on + strand at 953.330 kb on + strand at 953.330 kb on + strand at 953.330 kb on + strand at 953.454 kb on + strand at 953.505 kb on + strand, within CA265_RS03990 at 953.539 kb on + strand, within CA265_RS03990 at 953.545 kb on - strand, within CA265_RS03990 at 953.589 kb on - strand, within CA265_RS03990 at 953.595 kb on + strand, within CA265_RS03990 at 953.655 kb on + strand, within CA265_RS03990 at 953.680 kb on + strand, within CA265_RS03990 at 953.681 kb on - strand, within CA265_RS03990 at 953.691 kb on - strand, within CA265_RS03990 at 953.758 kb on - strand, within CA265_RS03990 at 953.762 kb on - strand, within CA265_RS03990 at 953.769 kb on + strand, within CA265_RS03990 at 953.770 kb on - strand, within CA265_RS03990 at 953.829 kb on + strand, within CA265_RS03990 at 953.852 kb on + strand, within CA265_RS03990 at 953.882 kb on + strand, within CA265_RS03990 at 953.882 kb on + strand, within CA265_RS03990 at 953.908 kb on + strand, within CA265_RS03990 at 953.929 kb on + strand, within CA265_RS03990 at 954.084 kb on - strand, within CA265_RS03990 at 954.084 kb on - strand, within CA265_RS03990 at 954.085 kb on + strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.130 kb on - strand, within CA265_RS03990 at 954.132 kb on + strand, within CA265_RS03990 at 954.151 kb on - strand, within CA265_RS03990 at 954.270 kb on - strand, within CA265_RS03990 at 954.274 kb on - strand, within CA265_RS03990 at 954.287 kb on + strand, within CA265_RS03990 at 954.297 kb on + strand, within CA265_RS03990 at 954.298 kb on - strand, within CA265_RS03990 at 954.381 kb on + strand, within CA265_RS03990 at 954.476 kb on + strand, within CA265_RS03990 at 954.485 kb on - strand, within CA265_RS03990 at 954.497 kb on + strand, within CA265_RS03990 at 954.502 kb on - strand, within CA265_RS03990 at 954.505 kb on - strand, within CA265_RS03990 at 954.517 kb on - strand, within CA265_RS03990 at 954.528 kb on + strand, within CA265_RS03990 at 954.528 kb on + strand, within CA265_RS03990 at 954.536 kb on + strand, within CA265_RS03990 at 954.536 kb on + strand, within CA265_RS03990 at 954.601 kb on + strand, within CA265_RS03990 at 954.601 kb on + strand, within CA265_RS03990 at 954.675 kb on + strand, within CA265_RS03990 at 954.747 kb on - strand, within CA265_RS03990 at 954.751 kb on - strand, within CA265_RS03990 at 954.751 kb on - strand, within CA265_RS03990 at 954.762 kb on + strand, within CA265_RS03990 at 954.763 kb on - strand, within CA265_RS03990 at 954.793 kb on + strand, within CA265_RS03990 at 954.794 kb on - strand, within CA265_RS03990 at 954.797 kb on + strand, within CA265_RS03990 at 954.797 kb on + strand, within CA265_RS03990 at 954.819 kb on - strand, within CA265_RS03990 at 954.820 kb on + strand, within CA265_RS03990 at 954.850 kb on - strand at 954.850 kb on - strand at 954.887 kb on + strand at 954.888 kb on - strand at 954.904 kb on + strand at 954.956 kb on - strand at 955.073 kb on + strand at 955.077 kb on - strand at 955.103 kb on + strand at 955.116 kb on - strand at 955.116 kb on - strand at 955.122 kb on - strand at 955.122 kb on - strand at 955.124 kb on - strand at 955.124 kb on - strand at 955.199 kb on + strand, within CA265_RS03995 at 955.213 kb on + strand, within CA265_RS03995 at 955.307 kb on - strand, within CA265_RS03995 at 955.452 kb on + strand, within CA265_RS03995 at 955.455 kb on - strand, within CA265_RS03995 at 955.480 kb on + strand, within CA265_RS03995 at 955.712 kb on - strand, within CA265_RS03995 at 955.756 kb on + strand, within CA265_RS03995 at 955.756 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.766 kb on + strand, within CA265_RS03995 at 955.793 kb on - strand, within CA265_RS03995 at 955.822 kb on - strand, within CA265_RS03995 at 955.822 kb on - strand, within CA265_RS03995 at 955.832 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.864 kb on - strand, within CA265_RS03995 at 955.892 kb on - strand, within CA265_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 952,317 - CA265_RS03985 0.50 -0.4 952,333 + CA265_RS03985 0.51 -2.1 952,353 + CA265_RS03985 0.52 -0.6 952,388 - CA265_RS03985 0.54 -0.9 952,412 - CA265_RS03985 0.55 -0.9 952,414 + CA265_RS03985 0.55 -0.3 952,415 - CA265_RS03985 0.55 -0.2 952,436 - CA265_RS03985 0.56 -0.5 952,441 - CA265_RS03985 0.57 -0.4 952,478 - CA265_RS03985 0.58 -0.8 952,478 - CA265_RS03985 0.58 +0.4 952,481 + CA265_RS03985 0.59 -2.2 952,610 + CA265_RS03985 0.65 -0.0 952,611 - CA265_RS03985 0.65 -0.7 952,660 + CA265_RS03985 0.68 -1.4 952,669 + CA265_RS03985 0.68 -0.8 952,669 + CA265_RS03985 0.68 -1.3 952,742 - CA265_RS03985 0.72 -0.3 952,759 - CA265_RS03985 0.73 -0.3 952,812 - +1.2 952,853 + CA265_RS03985 0.78 -1.3 952,854 - CA265_RS03985 0.78 -0.4 952,856 - CA265_RS03985 0.78 -0.1 952,859 - CA265_RS03985 0.78 +0.7 952,917 + CA265_RS03985 0.81 -1.3 952,929 + CA265_RS03985 0.82 -0.9 952,955 - CA265_RS03985 0.83 -0.1 952,992 - CA265_RS03985 0.85 +0.4 953,041 + CA265_RS03985 0.87 -1.9 953,049 + CA265_RS03985 0.88 -1.0 953,050 - CA265_RS03985 0.88 +0.2 953,084 + CA265_RS03985 0.89 -0.4 953,088 + CA265_RS03985 0.90 -0.9 953,089 - CA265_RS03985 0.90 -0.2 953,089 - CA265_RS03985 0.90 -0.4 953,097 + -0.4 953,202 + -1.3 953,202 + -0.8 953,249 - -0.7 953,252 + -0.4 953,252 + -2.1 953,253 - +0.7 953,257 + +2.2 953,258 - +1.1 953,321 + -0.2 953,325 + +0.9 953,330 + -0.1 953,330 + +0.3 953,330 + +0.2 953,454 + -0.3 953,505 + CA265_RS03990 0.13 +0.1 953,539 + CA265_RS03990 0.15 -0.1 953,545 - CA265_RS03990 0.15 +0.2 953,589 - CA265_RS03990 0.18 +0.1 953,595 + CA265_RS03990 0.18 +0.1 953,655 + CA265_RS03990 0.21 +0.3 953,680 + CA265_RS03990 0.23 -0.8 953,681 - CA265_RS03990 0.23 -0.3 953,691 - CA265_RS03990 0.24 -1.1 953,758 - CA265_RS03990 0.28 -0.4 953,762 - CA265_RS03990 0.28 +0.6 953,769 + CA265_RS03990 0.28 -1.4 953,770 - CA265_RS03990 0.28 -0.4 953,829 + CA265_RS03990 0.32 -0.7 953,852 + CA265_RS03990 0.33 +1.0 953,882 + CA265_RS03990 0.35 -0.7 953,882 + CA265_RS03990 0.35 -1.4 953,908 + CA265_RS03990 0.36 -1.6 953,929 + CA265_RS03990 0.38 +0.3 954,084 - CA265_RS03990 0.47 -1.1 954,084 - CA265_RS03990 0.47 -0.6 954,085 + CA265_RS03990 0.47 -0.1 954,086 - CA265_RS03990 0.47 +0.2 954,086 - CA265_RS03990 0.47 +0.8 954,086 - CA265_RS03990 0.47 -0.0 954,086 - CA265_RS03990 0.47 -0.1 954,130 - CA265_RS03990 0.49 -0.2 954,132 + CA265_RS03990 0.50 +0.1 954,151 - CA265_RS03990 0.51 +0.4 954,270 - CA265_RS03990 0.58 +1.2 954,274 - CA265_RS03990 0.58 +0.2 954,287 + CA265_RS03990 0.59 -1.1 954,297 + CA265_RS03990 0.59 -0.0 954,298 - CA265_RS03990 0.59 -0.5 954,381 + CA265_RS03990 0.64 +0.1 954,476 + CA265_RS03990 0.70 -0.3 954,485 - CA265_RS03990 0.70 +0.3 954,497 + CA265_RS03990 0.71 -1.2 954,502 - CA265_RS03990 0.71 -0.2 954,505 - CA265_RS03990 0.71 +0.5 954,517 - CA265_RS03990 0.72 +0.0 954,528 + CA265_RS03990 0.73 -1.5 954,528 + CA265_RS03990 0.73 -1.7 954,536 + CA265_RS03990 0.73 +0.6 954,536 + CA265_RS03990 0.73 -0.0 954,601 + CA265_RS03990 0.77 -0.2 954,601 + CA265_RS03990 0.77 -0.4 954,675 + CA265_RS03990 0.81 +0.8 954,747 - CA265_RS03990 0.86 -0.1 954,751 - CA265_RS03990 0.86 -0.4 954,751 - CA265_RS03990 0.86 -2.1 954,762 + CA265_RS03990 0.87 -0.4 954,763 - CA265_RS03990 0.87 -0.1 954,793 + CA265_RS03990 0.88 +0.6 954,794 - CA265_RS03990 0.88 +0.2 954,797 + CA265_RS03990 0.89 +1.2 954,797 + CA265_RS03990 0.89 -1.6 954,819 - CA265_RS03990 0.90 -0.4 954,820 + CA265_RS03990 0.90 -3.5 954,850 - -0.4 954,850 - -0.2 954,887 + -0.6 954,888 - -0.5 954,904 + -1.5 954,956 - -0.4 955,073 + +0.4 955,077 - -0.2 955,103 + -0.7 955,116 - -2.2 955,116 - -0.2 955,122 - -0.8 955,122 - -1.0 955,124 - -0.3 955,124 - -0.9 955,199 + CA265_RS03995 0.11 -1.2 955,213 + CA265_RS03995 0.12 -0.6 955,307 - CA265_RS03995 0.17 -0.8 955,452 + CA265_RS03995 0.26 -0.4 955,455 - CA265_RS03995 0.26 -1.6 955,480 + CA265_RS03995 0.28 +0.8 955,712 - CA265_RS03995 0.42 -0.1 955,756 + CA265_RS03995 0.45 -0.6 955,756 + CA265_RS03995 0.45 -1.2 955,766 + CA265_RS03995 0.46 +0.6 955,766 + CA265_RS03995 0.46 -0.3 955,766 + CA265_RS03995 0.46 -1.0 955,793 - CA265_RS03995 0.47 +0.6 955,822 - CA265_RS03995 0.49 +0.4 955,822 - CA265_RS03995 0.49 -0.2 955,832 - CA265_RS03995 0.50 -0.1 955,864 - CA265_RS03995 0.52 -0.3 955,864 - CA265_RS03995 0.52 -0.5 955,864 - CA265_RS03995 0.52 +0.0 955,892 - CA265_RS03995 0.53 -1.7
Or see this region's nucleotide sequence