Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03625 and CA265_RS03630 are separated by 1 nucleotides CA265_RS03630 and CA265_RS03635 are separated by 106 nucleotides
CA265_RS03625: CA265_RS03625 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 865,999 to 867,132
_RS03625
CA265_RS03630: CA265_RS03630 - histidinol-phosphate transaminase, at 867,134 to 868,174
_RS03630
CA265_RS03635: CA265_RS03635 - histidinol dehydrogenase, at 868,281 to 869,561
_RS03635
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 866.134 kb on + strand, within CA265_RS03625 at 866.157 kb on + strand, within CA265_RS03625 at 866.178 kb on - strand, within CA265_RS03625 at 866.320 kb on + strand, within CA265_RS03625 at 866.333 kb on - strand, within CA265_RS03625 at 866.378 kb on - strand, within CA265_RS03625 at 866.398 kb on - strand, within CA265_RS03625 at 866.401 kb on + strand, within CA265_RS03625 at 866.401 kb on + strand, within CA265_RS03625 at 866.402 kb on - strand, within CA265_RS03625 at 866.420 kb on - strand, within CA265_RS03625 at 866.536 kb on - strand, within CA265_RS03625 at 866.601 kb on + strand, within CA265_RS03625 at 866.655 kb on + strand, within CA265_RS03625 at 866.780 kb on + strand, within CA265_RS03625 at 866.902 kb on - strand, within CA265_RS03625 at 866.993 kb on + strand, within CA265_RS03625 at 867.023 kb on + strand at 867.024 kb on - strand at 867.027 kb on - strand at 867.067 kb on + strand at 867.115 kb on - strand at 867.122 kb on - strand at 867.158 kb on + strand at 867.181 kb on + strand at 867.263 kb on - strand, within CA265_RS03630 at 867.363 kb on - strand, within CA265_RS03630 at 867.465 kb on + strand, within CA265_RS03630 at 867.465 kb on + strand, within CA265_RS03630 at 867.466 kb on - strand, within CA265_RS03630 at 867.567 kb on - strand, within CA265_RS03630 at 867.628 kb on + strand, within CA265_RS03630 at 867.633 kb on + strand, within CA265_RS03630 at 867.662 kb on - strand, within CA265_RS03630 at 867.686 kb on - strand, within CA265_RS03630 at 867.833 kb on + strand, within CA265_RS03630 at 867.834 kb on - strand, within CA265_RS03630 at 867.853 kb on - strand, within CA265_RS03630 at 867.853 kb on - strand, within CA265_RS03630 at 867.921 kb on - strand, within CA265_RS03630 at 867.981 kb on - strand, within CA265_RS03630 at 868.158 kb on - strand at 868.224 kb on - strand at 868.225 kb on + strand at 868.225 kb on + strand at 868.225 kb on + strand at 868.228 kb on - strand at 868.264 kb on + strand at 868.313 kb on + strand at 868.362 kb on + strand at 868.363 kb on - strand at 868.425 kb on - strand, within CA265_RS03635 at 868.469 kb on + strand, within CA265_RS03635 at 868.469 kb on + strand, within CA265_RS03635 at 868.470 kb on - strand, within CA265_RS03635 at 868.470 kb on - strand, within CA265_RS03635 at 868.545 kb on - strand, within CA265_RS03635 at 868.556 kb on + strand, within CA265_RS03635 at 868.578 kb on - strand, within CA265_RS03635 at 868.644 kb on + strand, within CA265_RS03635 at 868.766 kb on + strand, within CA265_RS03635 at 868.855 kb on - strand, within CA265_RS03635 at 868.877 kb on + strand, within CA265_RS03635 at 868.887 kb on + strand, within CA265_RS03635 at 868.888 kb on - strand, within CA265_RS03635 at 868.949 kb on + strand, within CA265_RS03635 at 868.949 kb on + strand, within CA265_RS03635 at 868.951 kb on + strand, within CA265_RS03635 at 868.952 kb on - strand, within CA265_RS03635 at 868.954 kb on - strand at 869.013 kb on + strand, within CA265_RS03635 at 869.013 kb on + strand, within CA265_RS03635 at 869.060 kb on - strand, within CA265_RS03635 at 869.161 kb on - strand, within CA265_RS03635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 866,134 + CA265_RS03625 0.12 -1.8 866,157 + CA265_RS03625 0.14 +0.6 866,178 - CA265_RS03625 0.16 +1.7 866,320 + CA265_RS03625 0.28 -1.6 866,333 - CA265_RS03625 0.29 +1.0 866,378 - CA265_RS03625 0.33 +2.7 866,398 - CA265_RS03625 0.35 +3.3 866,401 + CA265_RS03625 0.35 -2.4 866,401 + CA265_RS03625 0.35 -1.2 866,402 - CA265_RS03625 0.36 +2.4 866,420 - CA265_RS03625 0.37 +2.0 866,536 - CA265_RS03625 0.47 +0.9 866,601 + CA265_RS03625 0.53 -1.1 866,655 + CA265_RS03625 0.58 -0.6 866,780 + CA265_RS03625 0.69 -1.7 866,902 - CA265_RS03625 0.80 +1.5 866,993 + CA265_RS03625 0.88 -1.4 867,023 + -2.4 867,024 - +1.1 867,027 - +2.3 867,067 + -1.0 867,115 - +1.4 867,122 - +1.1 867,158 + -0.9 867,181 + -0.4 867,263 - CA265_RS03630 0.12 +3.0 867,363 - CA265_RS03630 0.22 +3.3 867,465 + CA265_RS03630 0.32 -2.0 867,465 + CA265_RS03630 0.32 -1.4 867,466 - CA265_RS03630 0.32 +2.8 867,567 - CA265_RS03630 0.42 +1.0 867,628 + CA265_RS03630 0.47 -3.1 867,633 + CA265_RS03630 0.48 -1.2 867,662 - CA265_RS03630 0.51 +2.4 867,686 - CA265_RS03630 0.53 +2.5 867,833 + CA265_RS03630 0.67 -1.3 867,834 - CA265_RS03630 0.67 +2.1 867,853 - CA265_RS03630 0.69 +2.0 867,853 - CA265_RS03630 0.69 +2.2 867,921 - CA265_RS03630 0.76 +2.6 867,981 - CA265_RS03630 0.81 +3.3 868,158 - +1.8 868,224 - +2.3 868,225 + -0.9 868,225 + -1.2 868,225 + -0.8 868,228 - +2.2 868,264 + -0.5 868,313 + -0.2 868,362 + -1.2 868,363 - +1.9 868,425 - CA265_RS03635 0.11 +1.6 868,469 + CA265_RS03635 0.15 -1.2 868,469 + CA265_RS03635 0.15 -1.6 868,470 - CA265_RS03635 0.15 +1.1 868,470 - CA265_RS03635 0.15 +1.9 868,545 - CA265_RS03635 0.21 +1.6 868,556 + CA265_RS03635 0.21 -2.2 868,578 - CA265_RS03635 0.23 +2.4 868,644 + CA265_RS03635 0.28 -1.2 868,766 + CA265_RS03635 0.38 -2.0 868,855 - CA265_RS03635 0.45 +1.0 868,877 + CA265_RS03635 0.47 -2.0 868,887 + CA265_RS03635 0.47 -1.1 868,888 - CA265_RS03635 0.47 -0.4 868,949 + CA265_RS03635 0.52 -1.8 868,949 + CA265_RS03635 0.52 -1.3 868,951 + CA265_RS03635 0.52 -1.5 868,952 - CA265_RS03635 0.52 +1.1 868,954 - +2.2 869,013 + CA265_RS03635 0.57 -1.7 869,013 + CA265_RS03635 0.57 -1.5 869,060 - CA265_RS03635 0.61 +0.5 869,161 - CA265_RS03635 0.69 +1.5
Or see this region's nucleotide sequence