Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02870

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02865 and CA265_RS02870 are separated by 82 nucleotidesCA265_RS02870 and CA265_RS02875 are separated by 109 nucleotidesCA265_RS02875 and CA265_RS02880 are separated by 9 nucleotides CA265_RS02865: CA265_RS02865 - elongation factor Tu, at 714,719 to 715,906 _RS02865 CA265_RS02870: CA265_RS02870 - tRNA-Trp, at 715,989 to 716,059 _RS02870 CA265_RS02875: CA265_RS02875 - preprotein translocase subunit SecE, at 716,169 to 716,366 _RS02875 CA265_RS02880: CA265_RS02880 - transcription termination/antitermination factor NusG, at 716,376 to 716,915 _RS02880 Position (kb) 715 716 717Strain fitness (log2 ratio) -1 0 1at 717.027 kb on - strandat 717.053 kb on - strandat 717.056 kb on + strandat 717.056 kb on + strandat 717.056 kb on + strandat 717.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml
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717,027 - +0.5
717,053 - -0.9
717,056 + +0.3
717,056 + +0.3
717,056 + +0.5
717,057 - +0.1

Or see this region's nucleotide sequence