Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02605

Experiment: R2A with Paraquat dichloride 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02600 and CA265_RS02605 are separated by 206 nucleotidesCA265_RS02605 and CA265_RS02610 are separated by 71 nucleotides CA265_RS02600: CA265_RS02600 - hypothetical protein, at 654,758 to 657,175 _RS02600 CA265_RS02605: CA265_RS02605 - hypothetical protein, at 657,382 to 658,389 _RS02605 CA265_RS02610: CA265_RS02610 - DNA-binding response regulator, at 658,461 to 659,195 _RS02610 Position (kb) 657 658 659Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 656.382 kb on - strand, within CA265_RS02600at 656.382 kb on - strand, within CA265_RS02600at 656.382 kb on - strand, within CA265_RS02600at 656.386 kb on + strand, within CA265_RS02600at 656.396 kb on - strand, within CA265_RS02600at 656.430 kb on + strand, within CA265_RS02600at 656.498 kb on - strandat 656.593 kb on + strand, within CA265_RS02600at 656.599 kb on - strand, within CA265_RS02600at 656.623 kb on + strand, within CA265_RS02600at 656.623 kb on + strand, within CA265_RS02600at 656.624 kb on - strand, within CA265_RS02600at 656.624 kb on - strand, within CA265_RS02600at 656.626 kb on - strand, within CA265_RS02600at 656.648 kb on + strand, within CA265_RS02600at 656.762 kb on + strand, within CA265_RS02600at 656.774 kb on + strand, within CA265_RS02600at 656.857 kb on + strand, within CA265_RS02600at 656.858 kb on - strand, within CA265_RS02600at 656.938 kb on + strandat 657.035 kb on + strandat 657.052 kb on - strandat 657.110 kb on - strandat 657.110 kb on - strandat 657.111 kb on + strandat 657.121 kb on + strandat 657.134 kb on - strandat 657.210 kb on - strandat 657.226 kb on + strandat 657.235 kb on + strandat 657.282 kb on + strandat 657.306 kb on + strandat 657.319 kb on - strandat 657.339 kb on + strandat 657.368 kb on + strandat 657.412 kb on - strandat 657.454 kb on + strandat 657.477 kb on + strandat 657.495 kb on + strand, within CA265_RS02605at 657.496 kb on - strand, within CA265_RS02605at 657.538 kb on + strand, within CA265_RS02605at 657.542 kb on + strand, within CA265_RS02605at 657.542 kb on + strand, within CA265_RS02605at 657.543 kb on - strand, within CA265_RS02605at 657.543 kb on - strand, within CA265_RS02605at 657.659 kb on + strand, within CA265_RS02605at 657.660 kb on - strand, within CA265_RS02605at 657.683 kb on - strand, within CA265_RS02605at 657.685 kb on - strand, within CA265_RS02605at 657.709 kb on + strand, within CA265_RS02605at 657.727 kb on + strand, within CA265_RS02605at 657.771 kb on + strand, within CA265_RS02605at 657.772 kb on - strand, within CA265_RS02605at 657.879 kb on + strand, within CA265_RS02605at 657.879 kb on + strand, within CA265_RS02605at 657.887 kb on + strand, within CA265_RS02605at 657.888 kb on - strand, within CA265_RS02605at 657.893 kb on - strand, within CA265_RS02605at 657.893 kb on - strand, within CA265_RS02605at 657.899 kb on - strand, within CA265_RS02605at 657.910 kb on - strand, within CA265_RS02605at 657.945 kb on - strand, within CA265_RS02605at 657.982 kb on - strand, within CA265_RS02605at 657.993 kb on + strand, within CA265_RS02605at 658.004 kb on + strand, within CA265_RS02605at 658.004 kb on + strand, within CA265_RS02605at 658.017 kb on - strand, within CA265_RS02605at 658.033 kb on + strand, within CA265_RS02605at 658.033 kb on + strand, within CA265_RS02605at 658.047 kb on + strand, within CA265_RS02605at 658.152 kb on + strand, within CA265_RS02605at 658.167 kb on - strand, within CA265_RS02605at 658.201 kb on - strand, within CA265_RS02605at 658.236 kb on + strand, within CA265_RS02605at 658.287 kb on - strand, within CA265_RS02605at 658.291 kb on - strandat 658.356 kb on + strandat 658.356 kb on + strandat 658.356 kb on + strandat 658.402 kb on - strandat 658.460 kb on + strandat 658.460 kb on + strandat 658.495 kb on - strandat 658.505 kb on + strandat 658.506 kb on - strandat 658.508 kb on + strandat 658.581 kb on - strand, within CA265_RS02610at 658.622 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.624 kb on + strand, within CA265_RS02610at 658.625 kb on - strand, within CA265_RS02610at 658.673 kb on + strand, within CA265_RS02610at 658.741 kb on + strand, within CA265_RS02610at 658.742 kb on - strand, within CA265_RS02610at 658.754 kb on + strand, within CA265_RS02610at 658.755 kb on - strand, within CA265_RS02610at 658.755 kb on - strand, within CA265_RS02610at 658.768 kb on - strand, within CA265_RS02610at 658.843 kb on + strand, within CA265_RS02610at 658.917 kb on - strand, within CA265_RS02610at 658.921 kb on - strand, within CA265_RS02610at 658.929 kb on - strand, within CA265_RS02610at 658.929 kb on - strand, within CA265_RS02610at 658.933 kb on + strand, within CA265_RS02610at 658.933 kb on + strand, within CA265_RS02610at 658.936 kb on - strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.937 kb on + strand, within CA265_RS02610at 658.938 kb on - strand, within CA265_RS02610at 658.938 kb on - strand, within CA265_RS02610at 658.939 kb on + strand, within CA265_RS02610at 658.939 kb on + strand, within CA265_RS02610at 658.991 kb on + strand, within CA265_RS02610at 658.995 kb on + strand, within CA265_RS02610at 659.055 kb on - strand, within CA265_RS02610at 659.055 kb on - strand, within CA265_RS02610at 659.061 kb on + strand, within CA265_RS02610at 659.064 kb on - strand, within CA265_RS02610at 659.064 kb on - strand, within CA265_RS02610at 659.147 kb on + strandat 659.269 kb on - strandat 659.367 kb on + strandat 659.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml
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656,382 - CA265_RS02600 0.67 -0.3
656,382 - CA265_RS02600 0.67 -0.9
656,382 - CA265_RS02600 0.67 +0.7
656,386 + CA265_RS02600 0.67 -0.3
656,396 - CA265_RS02600 0.68 -1.2
656,430 + CA265_RS02600 0.69 -0.3
656,498 - +0.2
656,593 + CA265_RS02600 0.76 +0.7
656,599 - CA265_RS02600 0.76 -0.3
656,623 + CA265_RS02600 0.77 -1.2
656,623 + CA265_RS02600 0.77 +0.6
656,624 - CA265_RS02600 0.77 -0.1
656,624 - CA265_RS02600 0.77 +1.1
656,626 - CA265_RS02600 0.77 -1.4
656,648 + CA265_RS02600 0.78 -0.3
656,762 + CA265_RS02600 0.83 +0.1
656,774 + CA265_RS02600 0.83 +0.4
656,857 + CA265_RS02600 0.87 -0.4
656,858 - CA265_RS02600 0.87 +0.2
656,938 + +0.7
657,035 + +0.9
657,052 - +0.6
657,110 - -0.2
657,110 - -1.2
657,111 + +0.2
657,121 + -0.4
657,134 - -0.8
657,210 - +1.3
657,226 + +2.2
657,235 + -2.0
657,282 + +0.7
657,306 + +0.7
657,319 - -0.5
657,339 + -0.1
657,368 + -1.5
657,412 - +0.9
657,454 + +0.5
657,477 + +2.0
657,495 + CA265_RS02605 0.11 +2.7
657,496 - CA265_RS02605 0.11 +1.4
657,538 + CA265_RS02605 0.15 +2.0
657,542 + CA265_RS02605 0.16 +0.3
657,542 + CA265_RS02605 0.16 +0.7
657,543 - CA265_RS02605 0.16 +0.3
657,543 - CA265_RS02605 0.16 +0.3
657,659 + CA265_RS02605 0.27 +0.1
657,660 - CA265_RS02605 0.28 +0.4
657,683 - CA265_RS02605 0.30 +0.2
657,685 - CA265_RS02605 0.30 +1.0
657,709 + CA265_RS02605 0.32 -0.8
657,727 + CA265_RS02605 0.34 -1.7
657,771 + CA265_RS02605 0.39 +2.3
657,772 - CA265_RS02605 0.39 -0.2
657,879 + CA265_RS02605 0.49 +3.1
657,879 + CA265_RS02605 0.49 +2.4
657,887 + CA265_RS02605 0.50 +3.8
657,888 - CA265_RS02605 0.50 -0.7
657,893 - CA265_RS02605 0.51 -0.1
657,893 - CA265_RS02605 0.51 -0.7
657,899 - CA265_RS02605 0.51 -0.6
657,910 - CA265_RS02605 0.52 +0.5
657,945 - CA265_RS02605 0.56 +0.2
657,982 - CA265_RS02605 0.60 -0.3
657,993 + CA265_RS02605 0.61 +1.4
658,004 + CA265_RS02605 0.62 +2.8
658,004 + CA265_RS02605 0.62 +2.6
658,017 - CA265_RS02605 0.63 -0.3
658,033 + CA265_RS02605 0.65 +2.0
658,033 + CA265_RS02605 0.65 +2.4
658,047 + CA265_RS02605 0.66 +1.6
658,152 + CA265_RS02605 0.76 -0.9
658,167 - CA265_RS02605 0.78 +0.3
658,201 - CA265_RS02605 0.81 +0.4
658,236 + CA265_RS02605 0.85 -0.3
658,287 - CA265_RS02605 0.90 +0.6
658,291 - +0.2
658,356 + +1.3
658,356 + -1.1
658,356 + -2.0
658,402 - -0.6
658,460 + +0.4
658,460 + -0.6
658,495 - +0.1
658,505 + +0.9
658,506 - -0.6
658,508 + +0.8
658,581 - CA265_RS02610 0.16 -0.4
658,622 + CA265_RS02610 0.22 -1.0
658,624 + CA265_RS02610 0.22 -0.2
658,624 + CA265_RS02610 0.22 -0.4
658,624 + CA265_RS02610 0.22 +0.2
658,624 + CA265_RS02610 0.22 -0.5
658,625 - CA265_RS02610 0.22 -0.1
658,673 + CA265_RS02610 0.29 +0.5
658,741 + CA265_RS02610 0.38 -0.5
658,742 - CA265_RS02610 0.38 -1.6
658,754 + CA265_RS02610 0.40 +1.0
658,755 - CA265_RS02610 0.40 -0.5
658,755 - CA265_RS02610 0.40 +0.5
658,768 - CA265_RS02610 0.42 -0.5
658,843 + CA265_RS02610 0.52 -0.5
658,917 - CA265_RS02610 0.62 -0.2
658,921 - CA265_RS02610 0.63 -0.3
658,929 - CA265_RS02610 0.64 -0.0
658,929 - CA265_RS02610 0.64 +0.2
658,933 + CA265_RS02610 0.64 +0.0
658,933 + CA265_RS02610 0.64 +0.0
658,936 - CA265_RS02610 0.65 -0.6
658,937 + CA265_RS02610 0.65 -0.9
658,937 + CA265_RS02610 0.65 +0.8
658,937 + CA265_RS02610 0.65 -0.5
658,938 - CA265_RS02610 0.65 +0.2
658,938 - CA265_RS02610 0.65 +0.5
658,939 + CA265_RS02610 0.65 -0.7
658,939 + CA265_RS02610 0.65 +0.4
658,991 + CA265_RS02610 0.72 -0.6
658,995 + CA265_RS02610 0.73 -0.7
659,055 - CA265_RS02610 0.81 -1.0
659,055 - CA265_RS02610 0.81 -0.9
659,061 + CA265_RS02610 0.82 +0.9
659,064 - CA265_RS02610 0.82 -0.5
659,064 - CA265_RS02610 0.82 -0.5
659,147 + -0.6
659,269 - +1.7
659,367 + -1.7
659,368 - +0.7

Or see this region's nucleotide sequence