Experiment: R2A with Paraquat dichloride 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02135 and CA265_RS02140 are separated by 442 nucleotides CA265_RS02140 and CA265_RS02145 are separated by 59 nucleotides
CA265_RS02135: CA265_RS02135 - TonB-dependent receptor, at 535,649 to 538,540
_RS02135
CA265_RS02140: CA265_RS02140 - glycosyl hydrolase, at 538,983 to 541,445
_RS02140
CA265_RS02145: CA265_RS02145 - 1,4-alpha-glucan branching enzyme, at 541,505 to 543,469
_RS02145
Position (kb) 538
539
540
541
542 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 537.991 kb on - strand, within CA265_RS02135 at 538.017 kb on - strand, within CA265_RS02135 at 538.022 kb on + strand, within CA265_RS02135 at 538.022 kb on + strand, within CA265_RS02135 at 538.023 kb on - strand, within CA265_RS02135 at 538.025 kb on + strand, within CA265_RS02135 at 538.025 kb on + strand, within CA265_RS02135 at 538.026 kb on - strand, within CA265_RS02135 at 538.026 kb on - strand, within CA265_RS02135 at 538.035 kb on - strand, within CA265_RS02135 at 538.079 kb on - strand, within CA265_RS02135 at 538.092 kb on - strand, within CA265_RS02135 at 538.095 kb on + strand, within CA265_RS02135 at 538.132 kb on + strand, within CA265_RS02135 at 538.133 kb on - strand, within CA265_RS02135 at 538.152 kb on + strand, within CA265_RS02135 at 538.175 kb on - strand, within CA265_RS02135 at 538.198 kb on - strand, within CA265_RS02135 at 538.198 kb on - strand, within CA265_RS02135 at 538.202 kb on + strand, within CA265_RS02135 at 538.203 kb on - strand, within CA265_RS02135 at 538.229 kb on - strand, within CA265_RS02135 at 538.232 kb on + strand, within CA265_RS02135 at 538.232 kb on + strand, within CA265_RS02135 at 538.234 kb on + strand, within CA265_RS02135 at 538.235 kb on - strand, within CA265_RS02135 at 538.268 kb on - strand at 538.268 kb on - strand at 538.268 kb on - strand at 538.268 kb on - strand at 538.322 kb on + strand at 538.392 kb on + strand at 538.393 kb on - strand at 538.393 kb on - strand at 538.425 kb on + strand at 538.457 kb on - strand at 538.518 kb on + strand at 538.526 kb on - strand at 538.539 kb on - strand at 538.568 kb on + strand at 538.568 kb on + strand at 538.580 kb on - strand at 538.580 kb on - strand at 538.582 kb on - strand at 538.647 kb on - strand at 538.671 kb on - strand at 538.682 kb on - strand at 538.687 kb on + strand at 538.688 kb on - strand at 538.738 kb on + strand at 538.739 kb on - strand at 538.747 kb on + strand at 538.784 kb on + strand at 538.813 kb on + strand at 538.814 kb on - strand at 538.916 kb on + strand at 538.916 kb on + strand at 538.920 kb on - strand at 538.932 kb on + strand at 538.978 kb on + strand at 538.978 kb on + strand at 538.978 kb on + strand at 539.053 kb on + strand at 539.053 kb on + strand at 539.066 kb on - strand at 539.070 kb on - strand at 539.168 kb on - strand at 539.192 kb on + strand at 539.193 kb on - strand at 539.193 kb on - strand at 539.318 kb on + strand, within CA265_RS02140 at 539.318 kb on + strand, within CA265_RS02140 at 539.375 kb on + strand, within CA265_RS02140 at 539.389 kb on + strand, within CA265_RS02140 at 539.389 kb on + strand, within CA265_RS02140 at 539.393 kb on + strand, within CA265_RS02140 at 539.393 kb on + strand, within CA265_RS02140 at 539.414 kb on + strand, within CA265_RS02140 at 539.453 kb on + strand, within CA265_RS02140 at 539.457 kb on + strand, within CA265_RS02140 at 539.458 kb on - strand, within CA265_RS02140 at 539.501 kb on - strand, within CA265_RS02140 at 539.501 kb on - strand, within CA265_RS02140 at 539.507 kb on + strand, within CA265_RS02140 at 539.555 kb on + strand, within CA265_RS02140 at 539.613 kb on + strand, within CA265_RS02140 at 539.661 kb on - strand, within CA265_RS02140 at 539.666 kb on + strand, within CA265_RS02140 at 539.698 kb on + strand, within CA265_RS02140 at 539.763 kb on - strand, within CA265_RS02140 at 539.763 kb on - strand, within CA265_RS02140 at 539.884 kb on + strand, within CA265_RS02140 at 539.929 kb on - strand, within CA265_RS02140 at 539.943 kb on + strand, within CA265_RS02140 at 539.944 kb on - strand, within CA265_RS02140 at 539.944 kb on - strand, within CA265_RS02140 at 539.944 kb on - strand, within CA265_RS02140 at 540.033 kb on - strand, within CA265_RS02140 at 540.041 kb on - strand, within CA265_RS02140 at 540.068 kb on - strand, within CA265_RS02140 at 540.079 kb on - strand, within CA265_RS02140 at 540.089 kb on + strand, within CA265_RS02140 at 540.139 kb on - strand, within CA265_RS02140 at 540.141 kb on - strand, within CA265_RS02140 at 540.186 kb on - strand, within CA265_RS02140 at 540.216 kb on - strand, within CA265_RS02140 at 540.221 kb on - strand, within CA265_RS02140 at 540.334 kb on - strand, within CA265_RS02140 at 540.359 kb on + strand, within CA265_RS02140 at 540.359 kb on + strand, within CA265_RS02140 at 540.360 kb on - strand, within CA265_RS02140 at 540.360 kb on - strand, within CA265_RS02140 at 540.389 kb on + strand, within CA265_RS02140 at 540.389 kb on + strand, within CA265_RS02140 at 540.471 kb on + strand, within CA265_RS02140 at 540.497 kb on + strand, within CA265_RS02140 at 540.498 kb on - strand, within CA265_RS02140 at 540.517 kb on + strand, within CA265_RS02140 at 540.581 kb on + strand, within CA265_RS02140 at 540.638 kb on - strand, within CA265_RS02140 at 540.656 kb on + strand, within CA265_RS02140 at 540.680 kb on + strand, within CA265_RS02140 at 540.734 kb on + strand, within CA265_RS02140 at 540.753 kb on + strand, within CA265_RS02140 at 540.754 kb on - strand, within CA265_RS02140 at 540.817 kb on + strand, within CA265_RS02140 at 540.891 kb on - strand, within CA265_RS02140 at 540.891 kb on - strand, within CA265_RS02140 at 540.899 kb on - strand, within CA265_RS02140 at 541.005 kb on + strand, within CA265_RS02140 at 541.006 kb on - strand, within CA265_RS02140 at 541.008 kb on - strand, within CA265_RS02140 at 541.008 kb on - strand, within CA265_RS02140 at 541.032 kb on - strand, within CA265_RS02140 at 541.087 kb on - strand, within CA265_RS02140 at 541.118 kb on - strand, within CA265_RS02140 at 541.161 kb on + strand, within CA265_RS02140 at 541.161 kb on + strand, within CA265_RS02140 at 541.162 kb on - strand, within CA265_RS02140 at 541.276 kb on - strand at 541.276 kb on - strand at 541.276 kb on - strand at 541.284 kb on - strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.344 kb on - strand at 541.349 kb on + strand at 541.394 kb on - strand at 541.470 kb on + strand at 541.470 kb on + strand at 541.471 kb on - strand at 541.588 kb on - strand at 541.603 kb on + strand at 541.662 kb on + strand at 541.666 kb on + strand at 541.725 kb on + strand, within CA265_RS02145 at 541.813 kb on + strand, within CA265_RS02145 at 541.841 kb on + strand, within CA265_RS02145 at 541.842 kb on - strand, within CA265_RS02145 at 541.848 kb on - strand, within CA265_RS02145 at 541.882 kb on - strand at 542.005 kb on - strand, within CA265_RS02145 at 542.037 kb on + strand, within CA265_RS02145 at 542.037 kb on + strand, within CA265_RS02145 at 542.038 kb on - strand, within CA265_RS02145 at 542.134 kb on + strand, within CA265_RS02145 at 542.143 kb on - strand, within CA265_RS02145 at 542.197 kb on + strand, within CA265_RS02145 at 542.204 kb on + strand, within CA265_RS02145 at 542.244 kb on + strand, within CA265_RS02145 at 542.245 kb on - strand, within CA265_RS02145 at 542.245 kb on - strand, within CA265_RS02145 at 542.245 kb on - strand, within CA265_RS02145 at 542.249 kb on + strand, within CA265_RS02145 at 542.250 kb on - strand, within CA265_RS02145 at 542.337 kb on - strand, within CA265_RS02145 at 542.410 kb on + strand, within CA265_RS02145 at 542.421 kb on - strand, within CA265_RS02145
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.003 mg/ml remove 537,991 - CA265_RS02135 0.81 +0.0 538,017 - CA265_RS02135 0.82 -0.5 538,022 + CA265_RS02135 0.82 +0.5 538,022 + CA265_RS02135 0.82 +0.1 538,023 - CA265_RS02135 0.82 -0.6 538,025 + CA265_RS02135 0.82 -0.6 538,025 + CA265_RS02135 0.82 -0.5 538,026 - CA265_RS02135 0.82 -2.1 538,026 - CA265_RS02135 0.82 -0.3 538,035 - CA265_RS02135 0.83 +0.7 538,079 - CA265_RS02135 0.84 -1.1 538,092 - CA265_RS02135 0.84 -0.2 538,095 + CA265_RS02135 0.85 +0.7 538,132 + CA265_RS02135 0.86 +0.3 538,133 - CA265_RS02135 0.86 +0.4 538,152 + CA265_RS02135 0.87 +0.7 538,175 - CA265_RS02135 0.87 +1.0 538,198 - CA265_RS02135 0.88 -0.5 538,198 - CA265_RS02135 0.88 -0.4 538,202 + CA265_RS02135 0.88 -0.8 538,203 - CA265_RS02135 0.88 -0.8 538,229 - CA265_RS02135 0.89 -1.3 538,232 + CA265_RS02135 0.89 -0.4 538,232 + CA265_RS02135 0.89 -0.1 538,234 + CA265_RS02135 0.89 +0.3 538,235 - CA265_RS02135 0.89 -1.1 538,268 - -0.8 538,268 - +0.1 538,268 - -1.5 538,268 - -1.0 538,322 + +0.5 538,392 + +0.7 538,393 - -0.3 538,393 - +0.1 538,425 + -4.0 538,457 - -0.5 538,518 + +0.1 538,526 - +0.0 538,539 - -0.4 538,568 + -0.3 538,568 + -0.5 538,580 - -0.5 538,580 - -1.2 538,582 - -0.4 538,647 - +0.9 538,671 - -1.7 538,682 - -0.3 538,687 + +0.6 538,688 - -0.4 538,738 + +0.1 538,739 - -0.9 538,747 + -0.4 538,784 + +0.3 538,813 + +1.0 538,814 - -0.7 538,916 + +0.3 538,916 + -0.6 538,920 - +1.4 538,932 + +0.2 538,978 + -1.0 538,978 + -0.2 538,978 + -0.3 539,053 + -0.0 539,053 + -1.0 539,066 - -1.0 539,070 - -1.0 539,168 - -1.6 539,192 + +0.6 539,193 - -0.9 539,193 - -1.6 539,318 + CA265_RS02140 0.14 -2.1 539,318 + CA265_RS02140 0.14 +0.6 539,375 + CA265_RS02140 0.16 -1.3 539,389 + CA265_RS02140 0.16 +0.4 539,389 + CA265_RS02140 0.16 +0.7 539,393 + CA265_RS02140 0.17 +0.4 539,393 + CA265_RS02140 0.17 -1.0 539,414 + CA265_RS02140 0.17 +1.0 539,453 + CA265_RS02140 0.19 +0.2 539,457 + CA265_RS02140 0.19 -0.4 539,458 - CA265_RS02140 0.19 -0.4 539,501 - CA265_RS02140 0.21 -0.8 539,501 - CA265_RS02140 0.21 -2.1 539,507 + CA265_RS02140 0.21 +0.2 539,555 + CA265_RS02140 0.23 +0.9 539,613 + CA265_RS02140 0.26 +0.6 539,661 - CA265_RS02140 0.28 -0.7 539,666 + CA265_RS02140 0.28 +0.4 539,698 + CA265_RS02140 0.29 -0.4 539,763 - CA265_RS02140 0.32 -0.4 539,763 - CA265_RS02140 0.32 +0.1 539,884 + CA265_RS02140 0.37 +1.4 539,929 - CA265_RS02140 0.38 -0.6 539,943 + CA265_RS02140 0.39 -1.2 539,944 - CA265_RS02140 0.39 -1.0 539,944 - CA265_RS02140 0.39 -0.8 539,944 - CA265_RS02140 0.39 +0.8 540,033 - CA265_RS02140 0.43 -3.3 540,041 - CA265_RS02140 0.43 -0.5 540,068 - CA265_RS02140 0.44 -0.6 540,079 - CA265_RS02140 0.44 -0.5 540,089 + CA265_RS02140 0.45 +0.4 540,139 - CA265_RS02140 0.47 -1.5 540,141 - CA265_RS02140 0.47 -1.1 540,186 - CA265_RS02140 0.49 -1.4 540,216 - CA265_RS02140 0.50 -1.0 540,221 - CA265_RS02140 0.50 -1.0 540,334 - CA265_RS02140 0.55 -0.8 540,359 + CA265_RS02140 0.56 -0.6 540,359 + CA265_RS02140 0.56 +1.4 540,360 - CA265_RS02140 0.56 -0.5 540,360 - CA265_RS02140 0.56 -1.3 540,389 + CA265_RS02140 0.57 +0.4 540,389 + CA265_RS02140 0.57 +0.1 540,471 + CA265_RS02140 0.60 -0.4 540,497 + CA265_RS02140 0.61 +0.8 540,498 - CA265_RS02140 0.62 -0.6 540,517 + CA265_RS02140 0.62 -0.3 540,581 + CA265_RS02140 0.65 +0.3 540,638 - CA265_RS02140 0.67 -3.3 540,656 + CA265_RS02140 0.68 +0.3 540,680 + CA265_RS02140 0.69 -0.8 540,734 + CA265_RS02140 0.71 +1.0 540,753 + CA265_RS02140 0.72 -0.6 540,754 - CA265_RS02140 0.72 -0.9 540,817 + CA265_RS02140 0.74 -2.5 540,891 - CA265_RS02140 0.77 +0.7 540,891 - CA265_RS02140 0.77 -1.4 540,899 - CA265_RS02140 0.78 -0.8 541,005 + CA265_RS02140 0.82 +0.3 541,006 - CA265_RS02140 0.82 -1.3 541,008 - CA265_RS02140 0.82 -1.7 541,008 - CA265_RS02140 0.82 -0.6 541,032 - CA265_RS02140 0.83 -0.4 541,087 - CA265_RS02140 0.85 -0.1 541,118 - CA265_RS02140 0.87 +0.2 541,161 + CA265_RS02140 0.88 -1.0 541,161 + CA265_RS02140 0.88 -0.3 541,162 - CA265_RS02140 0.88 -0.7 541,276 - -1.7 541,276 - -0.1 541,276 - -1.7 541,284 - -1.6 541,287 + -1.6 541,287 + +1.0 541,344 - -1.1 541,349 + -1.9 541,394 - -0.2 541,470 + +1.0 541,470 + -0.6 541,471 - -0.9 541,588 - -0.5 541,603 + -0.5 541,662 + -0.6 541,666 + -1.1 541,725 + CA265_RS02145 0.11 -0.3 541,813 + CA265_RS02145 0.16 -0.7 541,841 + CA265_RS02145 0.17 -1.5 541,842 - CA265_RS02145 0.17 -1.2 541,848 - CA265_RS02145 0.17 -1.5 541,882 - +1.7 542,005 - CA265_RS02145 0.25 -1.2 542,037 + CA265_RS02145 0.27 -0.0 542,037 + CA265_RS02145 0.27 +0.4 542,038 - CA265_RS02145 0.27 -2.2 542,134 + CA265_RS02145 0.32 -0.0 542,143 - CA265_RS02145 0.32 -2.2 542,197 + CA265_RS02145 0.35 +0.9 542,204 + CA265_RS02145 0.36 -0.8 542,244 + CA265_RS02145 0.38 -1.6 542,245 - CA265_RS02145 0.38 -1.2 542,245 - CA265_RS02145 0.38 -2.6 542,245 - CA265_RS02145 0.38 -1.4 542,249 + CA265_RS02145 0.38 +0.4 542,250 - CA265_RS02145 0.38 -0.7 542,337 - CA265_RS02145 0.42 -0.7 542,410 + CA265_RS02145 0.46 -1.2 542,421 - CA265_RS02145 0.47 -1.2
Or see this region's nucleotide sequence