Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14390

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14385 and ABIE51_RS14390 are separated by 173 nucleotidesABIE51_RS14390 and ABIE51_RS14395 are separated by 312 nucleotides ABIE51_RS14385: ABIE51_RS14385 - methyltransferase domain-containing protein, at 3,122,522 to 3,123,307 _RS14385 ABIE51_RS14390: ABIE51_RS14390 - response regulator, at 3,123,481 to 3,124,194 _RS14390 ABIE51_RS14395: ABIE51_RS14395 - PAS domain S-box protein, at 3,124,507 to 3,126,027 _RS14395 Position (kb) 3123 3124 3125Strain fitness (log2 ratio) -1 0 1 2at 3122.553 kb on + strandat 3122.651 kb on + strand, within ABIE51_RS14385at 3123.274 kb on - strandat 3123.274 kb on - strandat 3123.351 kb on + strandat 3123.351 kb on + strandat 3123.351 kb on + strandat 3123.351 kb on + strandat 3123.351 kb on + strandat 3123.351 kb on + strandat 3123.352 kb on - strandat 3123.352 kb on - strandat 3123.352 kb on - strandat 3123.355 kb on + strandat 3123.474 kb on + strandat 3123.701 kb on - strand, within ABIE51_RS14390at 3123.781 kb on + strand, within ABIE51_RS14390at 3123.782 kb on - strand, within ABIE51_RS14390at 3123.782 kb on - strand, within ABIE51_RS14390at 3123.816 kb on - strand, within ABIE51_RS14390at 3124.177 kb on + strandat 3124.177 kb on + strandat 3124.177 kb on + strandat 3124.179 kb on + strandat 3124.179 kb on + strandat 3124.180 kb on - strandat 3124.180 kb on - strandat 3124.180 kb on - strandat 3124.180 kb on - strandat 3124.180 kb on - strandat 3124.475 kb on + strandat 3124.475 kb on + strandat 3124.476 kb on - strandat 3124.476 kb on - strandat 3124.639 kb on + strandat 3125.174 kb on - strand, within ABIE51_RS14395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,122,553 + +0.3
3,122,651 + ABIE51_RS14385 0.16 +1.2
3,123,274 - -0.4
3,123,274 - -0.6
3,123,351 + -0.0
3,123,351 + +0.3
3,123,351 + -0.1
3,123,351 + +0.9
3,123,351 + -0.6
3,123,351 + -0.0
3,123,352 - -0.7
3,123,352 - -0.2
3,123,352 - +0.2
3,123,355 + -0.1
3,123,474 + +2.0
3,123,701 - ABIE51_RS14390 0.31 +0.3
3,123,781 + ABIE51_RS14390 0.42 +0.2
3,123,782 - ABIE51_RS14390 0.42 +0.8
3,123,782 - ABIE51_RS14390 0.42 -0.7
3,123,816 - ABIE51_RS14390 0.47 +0.4
3,124,177 + -0.0
3,124,177 + -0.2
3,124,177 + +0.1
3,124,179 + -0.4
3,124,179 + -0.7
3,124,180 - -0.0
3,124,180 - +0.2
3,124,180 - -0.7
3,124,180 - +0.7
3,124,180 - -1.2
3,124,475 + -0.5
3,124,475 + +0.3
3,124,476 - -0.9
3,124,476 - +0.1
3,124,639 + -0.5
3,125,174 - ABIE51_RS14395 0.44 -0.4

Or see this region's nucleotide sequence