Strain Fitness in Sinorhizobium meliloti 1021 around SMc03810

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03809 and SMc03810 are separated by 211 nucleotidesSMc03810 and SMc03811 overlap by 4 nucleotidesSMc03811 and SMc03812 overlap by 1 nucleotides SMc03809: SMc03809 - hypothetical protein, at 3,476,072 to 3,476,734 SMc03809 SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755 SMc03810 SMc03811: SMc03811 - hypothetical protein, at 3,477,752 to 3,478,582 SMc03811 SMc03812: SMc03812 - oxidoreductase, at 3,478,582 to 3,479,658 SMc03812 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -2 -1 0 1 2at 3476.810 kb on - strandat 3476.959 kb on + strandat 3477.001 kb on + strandat 3477.365 kb on + strand, within SMc03810at 3477.366 kb on - strand, within SMc03810at 3477.518 kb on - strand, within SMc03810at 3477.871 kb on - strand, within SMc03811at 3477.880 kb on - strand, within SMc03811at 3478.368 kb on + strand, within SMc03811at 3478.368 kb on + strand, within SMc03811at 3478.369 kb on - strand, within SMc03811at 3478.369 kb on - strand, within SMc03811at 3478.748 kb on + strand, within SMc03812at 3478.749 kb on - strand, within SMc03812at 3478.749 kb on - strand, within SMc03812

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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3,476,810 - -0.9
3,476,959 + -0.0
3,477,001 + +2.4
3,477,365 + SMc03810 0.52 +0.0
3,477,366 - SMc03810 0.52 +0.1
3,477,518 - SMc03810 0.71 +0.5
3,477,871 - SMc03811 0.14 -0.4
3,477,880 - SMc03811 0.15 -0.5
3,478,368 + SMc03811 0.74 -1.8
3,478,368 + SMc03811 0.74 +0.2
3,478,369 - SMc03811 0.74 -0.0
3,478,369 - SMc03811 0.74 -0.1
3,478,748 + SMc03812 0.15 -0.1
3,478,749 - SMc03812 0.16 +0.1
3,478,749 - SMc03812 0.16 +0.0

Or see this region's nucleotide sequence