Strain Fitness in Sinorhizobium meliloti 1021 around SMc03746

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03245 and SMc03746 are separated by 61 nucleotidesSMc03746 and SMc03747 are separated by 276 nucleotidesSMc03747 and SMc03748 are separated by 141 nucleotides SMc03245: SMc03245 - amidase, at 3,353,951 to 3,355,258 SMc03245 SMc03746: SMc03746 - hypothetical protein, at 3,355,320 to 3,355,481 SMc03746 SMc03747: SMc03747 - hypothetical protein, at 3,355,758 to 3,356,261 SMc03747 SMc03748: SMc03748 - hypothetical protein, at 3,356,403 to 3,357,227 SMc03748 Position (kb) 3355 3356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3354.504 kb on + strand, within SMc03245at 3354.889 kb on - strand, within SMc03245at 3355.070 kb on + strand, within SMc03245at 3355.100 kb on - strand, within SMc03245at 3355.137 kb on + strandat 3355.138 kb on - strandat 3355.138 kb on - strandat 3355.138 kb on - strandat 3355.316 kb on + strandat 3355.316 kb on + strandat 3355.426 kb on + strand, within SMc03746at 3355.426 kb on + strand, within SMc03746at 3355.427 kb on - strand, within SMc03746at 3355.510 kb on + strandat 3355.529 kb on + strandat 3355.560 kb on - strandat 3355.560 kb on - strandat 3355.596 kb on + strandat 3355.651 kb on - strandat 3355.716 kb on - strandat 3356.278 kb on + strandat 3356.279 kb on - strandat 3356.304 kb on + strandat 3356.304 kb on + strandat 3356.305 kb on - strandat 3356.318 kb on + strandat 3356.318 kb on + strandat 3356.476 kb on - strandat 3356.480 kb on + strandat 3356.480 kb on + strandat 3356.480 kb on + strandat 3356.480 kb on + strandat 3356.480 kb on + strandat 3356.480 kb on + strandat 3356.481 kb on - strandat 3356.481 kb on - strandat 3356.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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3,354,504 + SMc03245 0.42 -0.0
3,354,889 - SMc03245 0.72 +0.1
3,355,070 + SMc03245 0.86 +0.7
3,355,100 - SMc03245 0.88 -0.1
3,355,137 + -0.0
3,355,138 - +0.9
3,355,138 - -1.9
3,355,138 - +0.6
3,355,316 + +1.1
3,355,316 + -0.7
3,355,426 + SMc03746 0.65 +0.7
3,355,426 + SMc03746 0.65 +0.4
3,355,427 - SMc03746 0.66 +1.1
3,355,510 + -0.2
3,355,529 + -3.0
3,355,560 - -1.3
3,355,560 - +0.9
3,355,596 + +0.2
3,355,651 - +0.3
3,355,716 - -2.3
3,356,278 + -0.0
3,356,279 - +0.3
3,356,304 + -0.6
3,356,304 + -0.0
3,356,305 - +0.1
3,356,318 + -0.5
3,356,318 + +1.4
3,356,476 - +0.3
3,356,480 + -0.4
3,356,480 + -1.2
3,356,480 + +0.1
3,356,480 + +0.6
3,356,480 + +0.3
3,356,480 + -0.3
3,356,481 - +2.1
3,356,481 - -0.9
3,356,481 - +1.4

Or see this region's nucleotide sequence