Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03037 and SMc03038 are separated by 342 nucleotides SMc03038 and SMc03039 are separated by 265 nucleotides
SMc03037: SMc03037 - flagellin A, at 731,285 to 732,469
SMc03037
SMc03038: SMc03038 - flagellin B protein, at 732,812 to 733,996
SMc03038
SMc03039: SMc03039 - flagellin D protein, at 734,262 to 735,467
SMc03039
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1 at 731.847 kb on - strand, within SMc03037 at 732.598 kb on + strand at 732.598 kb on + strand at 732.670 kb on - strand at 732.684 kb on + strand at 732.786 kb on + strand at 732.866 kb on - strand at 732.948 kb on - strand, within SMc03038 at 732.982 kb on + strand, within SMc03038 at 732.983 kb on - strand, within SMc03038 at 733.307 kb on + strand, within SMc03038 at 733.315 kb on + strand, within SMc03038 at 733.315 kb on + strand, within SMc03038 at 733.374 kb on - strand, within SMc03038 at 733.374 kb on - strand, within SMc03038 at 733.981 kb on + strand at 733.981 kb on + strand at 733.981 kb on + strand at 733.982 kb on - strand at 733.994 kb on + strand at 734.136 kb on - strand at 734.162 kb on - strand at 734.260 kb on + strand at 734.388 kb on - strand, within SMc03039 at 734.397 kb on + strand, within SMc03039 at 734.493 kb on + strand, within SMc03039 at 734.672 kb on + strand, within SMc03039 at 734.698 kb on + strand, within SMc03039 at 734.754 kb on + strand, within SMc03039 at 734.755 kb on - strand, within SMc03039 at 734.755 kb on - strand, within SMc03039 at 734.821 kb on - strand, within SMc03039 at 734.880 kb on + strand, within SMc03039 at 734.881 kb on - strand, within SMc03039 at 734.981 kb on + strand, within SMc03039 at 734.988 kb on + strand, within SMc03039 at 734.989 kb on - strand, within SMc03039 at 734.991 kb on - strand, within SMc03039
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 731,847 - SMc03037 0.47 +0.0 732,598 + +0.1 732,598 + +0.2 732,670 - +0.2 732,684 + -0.7 732,786 + -0.2 732,866 - -0.1 732,948 - SMc03038 0.11 +0.0 732,982 + SMc03038 0.14 -0.4 732,983 - SMc03038 0.14 +0.4 733,307 + SMc03038 0.42 +0.4 733,315 + SMc03038 0.42 +0.6 733,315 + SMc03038 0.42 -0.3 733,374 - SMc03038 0.47 +1.7 733,374 - SMc03038 0.47 -0.4 733,981 + -0.1 733,981 + -0.1 733,981 + -0.2 733,982 - +0.2 733,994 + -0.2 734,136 - +0.8 734,162 - -0.1 734,260 + -1.2 734,388 - SMc03039 0.10 -0.2 734,397 + SMc03039 0.11 -0.2 734,493 + SMc03039 0.19 -0.4 734,672 + SMc03039 0.34 -1.1 734,698 + SMc03039 0.36 +0.0 734,754 + SMc03039 0.41 +0.3 734,755 - SMc03039 0.41 -0.6 734,755 - SMc03039 0.41 +0.5 734,821 - SMc03039 0.46 +0.1 734,880 + SMc03039 0.51 +0.5 734,881 - SMc03039 0.51 -0.0 734,981 + SMc03039 0.60 +0.4 734,988 + SMc03039 0.60 -1.9 734,989 - SMc03039 0.60 -0.4 734,991 - SMc03039 0.60 +0.5
Or see this region's nucleotide sequence