Strain Fitness in Sinorhizobium meliloti 1021 around SMc02879

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02878 and SMc02879 are separated by 283 nucleotidesSMc02879 and SMc02880 overlap by 4 nucleotidesSMc02880 and SMc02881 overlap by 4 nucleotides SMc02878: SMc02878 - N-acetylglucosamine-6-phosphate deacetylase, at 234,089 to 235,249 SMc02878 SMc02879: SMc02879 - hypothetical protein, at 235,533 to 236,270 SMc02879 SMc02880: SMc02880 - hypothetical protein, at 236,267 to 237,178 SMc02880 SMc02881: SMc02881 - hypothetical protein, at 237,175 to 238,536 SMc02881 Position (kb) 235 236 237Strain fitness (log2 ratio) -1 0 1at 235.791 kb on - strand, within SMc02879at 236.069 kb on - strand, within SMc02879at 236.105 kb on - strand, within SMc02879at 236.259 kb on + strandat 236.259 kb on + strandat 236.673 kb on - strand, within SMc02880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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235,791 - SMc02879 0.35 +1.6
236,069 - SMc02879 0.73 +0.1
236,105 - SMc02879 0.78 +0.0
236,259 + +0.3
236,259 + -0.3
236,673 - SMc02880 0.45 -0.0

Or see this region's nucleotide sequence