Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02864 and SMc02865 are separated by 7 nucleotides SMc02865 and SMc02866 overlap by 8 nucleotides SMc02866 and SMc02867 are separated by 61 nucleotides
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
SMc02867: SMc02867 - multidrug-efflux system transmembrane protein, at 219,907 to 223,053
SMc02867
Position (kb) 219
220 Strain fitness (log2 ratio) -1
0
1 at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866 at 219.815 kb on + strand at 219.816 kb on - strand at 219.816 kb on - strand at 219.848 kb on - strand at 219.884 kb on - strand at 219.909 kb on - strand at 220.292 kb on + strand, within SMc02867 at 220.613 kb on + strand, within SMc02867
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 218,332 + SMc02864 0.49 -0.5 218,332 + SMc02864 0.49 +0.8 218,333 - SMc02864 0.49 +0.3 218,367 + SMc02864 0.53 -0.2 218,375 - SMc02864 0.54 -1.2 218,570 + SMc02864 0.80 +0.1 218,669 - +0.1 218,669 - -0.8 218,960 + SMc02865 0.48 +0.8 218,961 - SMc02865 0.49 -0.2 218,961 - SMc02865 0.49 -0.1 219,007 - SMc02865 0.58 -0.6 219,497 - SMc02866 0.46 -0.2 219,703 + SMc02866 0.78 +0.3 219,815 + -0.4 219,816 - -0.2 219,816 - +0.1 219,848 - +0.4 219,884 - -1.5 219,909 - -1.6 220,292 + SMc02867 0.12 +0.4 220,613 + SMc02867 0.22 +1.0
Or see this region's nucleotide sequence