Strain Fitness in Sinorhizobium meliloti 1021 around SMc02778

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02779 and SMc02778 are separated by 281 nucleotidesSMc02778 and SMc02777 are separated by 12 nucleotides SMc02779: SMc02779 - transposase, at 13,646 to 14,611 SMc02779 SMc02778: SMc02778 - hydroxyacid aldolase, at 14,893 to 15,693 SMc02778 SMc02777: SMc02777 - transcriptional regulator, at 15,706 to 16,584 SMc02777 Position (kb) 14 15 16Strain fitness (log2 ratio) -2 -1 0 1at 14.799 kb on + strandat 14.799 kb on + strandat 14.799 kb on + strandat 14.799 kb on + strandat 14.799 kb on + strandat 14.799 kb on + strandat 14.799 kb on + strandat 14.892 kb on + strandat 14.977 kb on + strand, within SMc02778at 15.301 kb on + strand, within SMc02778at 15.677 kb on + strandat 15.870 kb on - strand, within SMc02777at 15.875 kb on + strand, within SMc02777at 15.875 kb on + strand, within SMc02777at 15.902 kb on + strand, within SMc02777at 15.902 kb on + strand, within SMc02777at 15.903 kb on - strand, within SMc02777at 16.112 kb on - strand, within SMc02777at 16.112 kb on - strand, within SMc02777at 16.367 kb on + strand, within SMc02777at 16.663 kb on + strandat 16.664 kb on - strandat 16.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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14,799 + +0.2
14,799 + -0.8
14,799 + -0.1
14,799 + +1.7
14,799 + -0.4
14,799 + +0.1
14,799 + -0.2
14,892 + -0.5
14,977 + SMc02778 0.10 +1.1
15,301 + SMc02778 0.51 +0.0
15,677 + +0.4
15,870 - SMc02777 0.19 -0.2
15,875 + SMc02777 0.19 -2.0
15,875 + SMc02777 0.19 +0.5
15,902 + SMc02777 0.22 +0.3
15,902 + SMc02777 0.22 +0.7
15,903 - SMc02777 0.22 +0.9
16,112 - SMc02777 0.46 -1.0
16,112 - SMc02777 0.46 +0.7
16,367 + SMc02777 0.75 -1.8
16,663 + -0.6
16,664 - -1.0
16,664 - -0.2

Or see this region's nucleotide sequence