Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02249 and SMc02250 are separated by 219 nucleotides SMc02250 and SMc02251 are separated by 133 nucleotides
SMc02249: SMc02249 - sensory transduction histidine kinase transmembrane protein, at 611,472 to 614,978
SMc02249
SMc02250: SMc02250 - large-conductance mechanosensitive channel, at 615,198 to 615,626
SMc02250
SMc02251: SMc02251 - aspartate aminotransferase, at 615,760 to 616,926
SMc02251
Position (kb) 615
616 Strain fitness (log2 ratio) -1
0
1 at 614.254 kb on + strand, within SMc02249 at 614.302 kb on - strand, within SMc02249 at 614.336 kb on + strand, within SMc02249 at 614.339 kb on - strand, within SMc02249 at 614.339 kb on - strand, within SMc02249 at 614.358 kb on - strand, within SMc02249 at 614.429 kb on + strand, within SMc02249 at 614.514 kb on + strand, within SMc02249 at 614.521 kb on + strand, within SMc02249 at 614.583 kb on - strand, within SMc02249 at 614.584 kb on + strand, within SMc02249 at 614.585 kb on - strand, within SMc02249 at 614.758 kb on + strand at 614.759 kb on - strand at 614.759 kb on - strand at 614.759 kb on - strand at 614.812 kb on + strand at 614.812 kb on + strand at 614.812 kb on + strand at 614.813 kb on - strand at 614.830 kb on + strand at 614.831 kb on - strand at 614.831 kb on - strand at 615.002 kb on + strand at 615.002 kb on + strand at 615.024 kb on - strand at 615.046 kb on + strand at 615.047 kb on - strand at 615.098 kb on + strand at 615.098 kb on + strand at 615.279 kb on - strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.364 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.832 kb on + strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.946 kb on + strand, within SMc02251 at 615.946 kb on + strand, within SMc02251 at 616.040 kb on - strand, within SMc02251 at 616.040 kb on - strand, within SMc02251 at 616.045 kb on - strand, within SMc02251 at 616.376 kb on - strand, within SMc02251 at 616.388 kb on - strand, within SMc02251 at 616.552 kb on + strand, within SMc02251 at 616.553 kb on - strand, within SMc02251
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 614,254 + SMc02249 0.79 +1.1 614,302 - SMc02249 0.81 -0.7 614,336 + SMc02249 0.82 +0.1 614,339 - SMc02249 0.82 -0.5 614,339 - SMc02249 0.82 +0.3 614,358 - SMc02249 0.82 +0.2 614,429 + SMc02249 0.84 +1.2 614,514 + SMc02249 0.87 +0.3 614,521 + SMc02249 0.87 +1.6 614,583 - SMc02249 0.89 +0.1 614,584 + SMc02249 0.89 +0.2 614,585 - SMc02249 0.89 +0.9 614,758 + +0.7 614,759 - -0.1 614,759 - -1.5 614,759 - -0.1 614,812 + -0.4 614,812 + -1.3 614,812 + +0.9 614,813 - +0.0 614,830 + +0.2 614,831 - +0.2 614,831 - +0.3 615,002 + -0.3 615,002 + +0.1 615,024 - -0.1 615,046 + -0.6 615,047 - -0.1 615,098 + +0.1 615,098 + -0.4 615,279 - SMc02250 0.19 +0.3 615,363 + SMc02250 0.38 +1.5 615,363 + SMc02250 0.38 -0.0 615,364 - SMc02250 0.39 +0.2 615,439 - SMc02250 0.56 +0.4 615,439 - SMc02250 0.56 +0.3 615,832 + -0.2 615,833 - +0.1 615,833 - -0.5 615,833 - +0.1 615,946 + SMc02251 0.16 -0.2 615,946 + SMc02251 0.16 -0.1 616,040 - SMc02251 0.24 -0.5 616,040 - SMc02251 0.24 -0.2 616,045 - SMc02251 0.24 +0.4 616,376 - SMc02251 0.53 +0.2 616,388 - SMc02251 0.54 +0.1 616,552 + SMc02251 0.68 +0.2 616,553 - SMc02251 0.68 +0.8
Or see this region's nucleotide sequence