Strain Fitness in Sinorhizobium meliloti 1021 around SMc02145

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02146 and SMc02145 are separated by 91 nucleotidesSMc02145 and SMc02144 overlap by 34 nucleotidesSMc02144 and SMc02143 overlap by 4 nucleotides SMc02146: SMc02146 - phosphate-binding periplasmic protein, at 566,715 to 567,749 SMc02146 SMc02145: SMc02145 - signal peptide protein, at 567,841 to 568,446 SMc02145 SMc02144: SMc02144 - phosphate ABC transporter permease, at 568,413 to 569,324 SMc02144 SMc02143: SMc02143 - phosphate ABC transporter permease, at 569,321 to 570,643 SMc02143 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1at 568.259 kb on - strand, within SMc02145at 568.372 kb on - strand, within SMc02145at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.627 kb on - strand, within SMc02144at 568.696 kb on - strand, within SMc02144at 568.696 kb on - strand, within SMc02144at 569.280 kb on + strandat 569.280 kb on + strandat 569.280 kb on + strandat 569.280 kb on + strandat 569.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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568,259 - SMc02145 0.69 +0.8
568,372 - SMc02145 0.88 +0.8
568,627 - SMc02144 0.23 -0.5
568,627 - SMc02144 0.23 +0.6
568,627 - SMc02144 0.23 -2.2
568,627 - SMc02144 0.23 -1.0
568,696 - SMc02144 0.31 +0.2
568,696 - SMc02144 0.31 -0.3
569,280 + -0.3
569,280 + +0.3
569,280 + -0.3
569,280 + +0.4
569,346 + -1.9

Or see this region's nucleotide sequence