Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01731 and SMc01730 are separated by 70 nucleotides SMc01730 and SMc01729 are separated by 34 nucleotides SMc01729 and SMc01728 are separated by 73 nucleotides
SMc01731: SMc01731 - hypothetical protein, at 471,359 to 472,258
SMc01731
SMc01730: SMc01730 - hypothetical protein, at 472,329 to 473,105
SMc01730
SMc01729: SMc01729 - hypothetical protein, at 473,140 to 474,054
SMc01729
SMc01728: SMc01728 - transcriptional regulator, at 474,128 to 475,240
SMc01728
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1 at 472.331 kb on - strand at 472.429 kb on + strand, within SMc01730 at 472.751 kb on + strand, within SMc01730 at 472.752 kb on - strand, within SMc01730 at 472.752 kb on - strand, within SMc01730 at 472.846 kb on + strand, within SMc01730 at 472.847 kb on - strand, within SMc01730 at 472.875 kb on - strand, within SMc01730 at 472.903 kb on + strand, within SMc01730 at 472.904 kb on - strand, within SMc01730 at 472.904 kb on - strand, within SMc01730 at 472.955 kb on - strand, within SMc01730 at 472.955 kb on - strand, within SMc01730 at 473.046 kb on + strand at 473.047 kb on - strand at 473.047 kb on - strand at 473.139 kb on + strand at 473.139 kb on + strand at 473.140 kb on - strand at 473.344 kb on + strand, within SMc01729 at 473.345 kb on - strand, within SMc01729 at 473.440 kb on + strand, within SMc01729 at 473.716 kb on + strand, within SMc01729 at 473.773 kb on - strand, within SMc01729 at 473.773 kb on - strand, within SMc01729 at 473.819 kb on + strand, within SMc01729 at 473.819 kb on + strand, within SMc01729 at 473.820 kb on - strand, within SMc01729 at 473.820 kb on - strand, within SMc01729 at 474.018 kb on + strand at 474.019 kb on - strand at 474.076 kb on + strand at 474.077 kb on - strand at 474.077 kb on - strand at 474.117 kb on + strand at 474.117 kb on + strand at 474.117 kb on + strand at 474.118 kb on - strand at 474.155 kb on - strand at 474.162 kb on - strand at 474.295 kb on + strand, within SMc01728 at 474.873 kb on - strand, within SMc01728 at 474.943 kb on - strand, within SMc01728 at 474.943 kb on - strand, within SMc01728
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 472,331 - +1.7 472,429 + SMc01730 0.13 -0.0 472,751 + SMc01730 0.54 +0.8 472,752 - SMc01730 0.54 -0.1 472,752 - SMc01730 0.54 -0.4 472,846 + SMc01730 0.67 -0.4 472,847 - SMc01730 0.67 +0.2 472,875 - SMc01730 0.70 +0.1 472,903 + SMc01730 0.74 -0.1 472,904 - SMc01730 0.74 -1.3 472,904 - SMc01730 0.74 -0.2 472,955 - SMc01730 0.81 -1.4 472,955 - SMc01730 0.81 -0.4 473,046 + +0.2 473,047 - -1.4 473,047 - -0.1 473,139 + -0.4 473,139 + +0.2 473,140 - -0.1 473,344 + SMc01729 0.22 +0.2 473,345 - SMc01729 0.22 +1.0 473,440 + SMc01729 0.33 +0.6 473,716 + SMc01729 0.63 -0.1 473,773 - SMc01729 0.69 +1.1 473,773 - SMc01729 0.69 +0.1 473,819 + SMc01729 0.74 +0.1 473,819 + SMc01729 0.74 -0.7 473,820 - SMc01729 0.74 +0.5 473,820 - SMc01729 0.74 +1.5 474,018 + -2.3 474,019 - -0.9 474,076 + +0.4 474,077 - -0.4 474,077 - +0.3 474,117 + +0.2 474,117 + -0.2 474,117 + +1.0 474,118 - +0.3 474,155 - +0.4 474,162 - -0.2 474,295 + SMc01728 0.15 +0.0 474,873 - SMc01728 0.67 +0.7 474,943 - SMc01728 0.73 +0.1 474,943 - SMc01728 0.73 -0.3
Or see this region's nucleotide sequence