Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01714 and SMc01713 are separated by 208 nucleotides SMc01713 and SMc01712 are separated by 21 nucleotides SMc01712 and SMc01711 are separated by 626 nucleotides
SMc01714: SMc01714 - hypothetical protein, at 490,630 to 491,118
SMc01714
SMc01713: SMc01713 - hypothetical protein, at 491,327 to 491,944
SMc01713
SMc01712: SMc01712 - L-lactate dehydrogenase (cytochrome) protein, at 491,966 to 493,177
SMc01712
SMc01711: SMc01711 - hypothetical protein, at 493,804 to 496,527
SMc01711
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -2
-1
0
1 at 491.105 kb on + strand at 491.106 kb on - strand at 491.116 kb on + strand at 491.117 kb on - strand at 491.259 kb on + strand at 491.300 kb on - strand at 491.584 kb on + strand, within SMc01713 at 491.585 kb on - strand, within SMc01713 at 491.773 kb on + strand, within SMc01713 at 491.774 kb on - strand, within SMc01713 at 491.895 kb on + strand at 491.895 kb on + strand at 491.895 kb on + strand at 491.896 kb on - strand at 491.902 kb on + strand at 491.902 kb on + strand at 491.902 kb on + strand at 491.903 kb on - strand at 491.903 kb on - strand at 492.001 kb on - strand at 492.110 kb on + strand, within SMc01712 at 492.110 kb on + strand, within SMc01712 at 492.111 kb on - strand, within SMc01712 at 492.112 kb on + strand, within SMc01712 at 492.113 kb on - strand, within SMc01712 at 492.260 kb on + strand, within SMc01712 at 492.261 kb on - strand, within SMc01712 at 492.261 kb on - strand, within SMc01712 at 492.261 kb on - strand, within SMc01712 at 492.425 kb on + strand, within SMc01712 at 492.627 kb on - strand, within SMc01712 at 492.627 kb on - strand, within SMc01712 at 492.699 kb on + strand, within SMc01712 at 492.708 kb on - strand, within SMc01712 at 492.942 kb on + strand, within SMc01712 at 492.942 kb on + strand, within SMc01712 at 492.942 kb on + strand, within SMc01712 at 492.943 kb on - strand, within SMc01712 at 492.943 kb on - strand, within SMc01712 at 492.943 kb on - strand, within SMc01712 at 493.031 kb on + strand, within SMc01712 at 493.032 kb on - strand, within SMc01712 at 493.034 kb on + strand, within SMc01712 at 493.034 kb on + strand, within SMc01712 at 493.035 kb on - strand, within SMc01712 at 493.035 kb on - strand, within SMc01712 at 493.150 kb on + strand at 493.151 kb on - strand at 493.151 kb on - strand at 493.206 kb on + strand at 493.207 kb on - strand at 493.207 kb on - strand at 493.551 kb on - strand at 493.641 kb on + strand at 493.642 kb on - strand at 493.650 kb on - strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.651 kb on + strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.652 kb on - strand at 493.800 kb on + strand at 493.800 kb on + strand at 494.048 kb on - strand at 494.055 kb on + strand at 494.056 kb on - strand at 494.056 kb on - strand at 494.098 kb on + strand, within SMc01711 at 494.098 kb on + strand, within SMc01711 at 494.099 kb on - strand, within SMc01711 at 494.099 kb on - strand, within SMc01711
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 491,105 + -0.0 491,106 - +0.2 491,116 + +0.3 491,117 - +0.9 491,259 + +0.1 491,300 - -0.6 491,584 + SMc01713 0.42 -0.2 491,585 - SMc01713 0.42 +0.5 491,773 + SMc01713 0.72 +0.2 491,774 - SMc01713 0.72 -0.2 491,895 + -0.5 491,895 + -0.6 491,895 + -0.4 491,896 - -0.8 491,902 + -0.4 491,902 + -0.1 491,902 + +0.1 491,903 - +0.7 491,903 - +0.4 492,001 - -0.9 492,110 + SMc01712 0.12 +0.4 492,110 + SMc01712 0.12 +0.6 492,111 - SMc01712 0.12 +0.1 492,112 + SMc01712 0.12 -0.1 492,113 - SMc01712 0.12 -0.3 492,260 + SMc01712 0.24 -0.2 492,261 - SMc01712 0.24 -0.3 492,261 - SMc01712 0.24 +1.2 492,261 - SMc01712 0.24 +0.3 492,425 + SMc01712 0.38 -0.1 492,627 - SMc01712 0.55 +0.4 492,627 - SMc01712 0.55 +1.4 492,699 + SMc01712 0.60 -1.6 492,708 - SMc01712 0.61 +0.2 492,942 + SMc01712 0.81 -0.2 492,942 + SMc01712 0.81 +1.1 492,942 + SMc01712 0.81 +0.1 492,943 - SMc01712 0.81 -1.4 492,943 - SMc01712 0.81 +1.0 492,943 - SMc01712 0.81 -0.3 493,031 + SMc01712 0.88 -0.1 493,032 - SMc01712 0.88 -0.3 493,034 + SMc01712 0.88 -0.1 493,034 + SMc01712 0.88 -0.9 493,035 - SMc01712 0.88 -1.0 493,035 - SMc01712 0.88 +0.3 493,150 + +0.3 493,151 - +0.4 493,151 - -0.0 493,206 + -0.5 493,207 - -0.1 493,207 - +0.4 493,551 - -0.1 493,641 + +0.9 493,642 - -0.6 493,650 - -1.8 493,651 + -1.4 493,651 + +0.9 493,651 + +0.0 493,651 + +0.3 493,651 + -0.7 493,651 + -0.2 493,651 + -0.0 493,651 + -0.1 493,652 - +0.8 493,652 - -0.6 493,652 - +0.5 493,652 - +0.4 493,652 - +1.0 493,652 - +0.1 493,652 - +0.2 493,800 + -0.0 493,800 + -0.5 494,048 - -0.1 494,055 + -0.3 494,056 - -0.0 494,056 - +0.0 494,098 + SMc01711 0.11 -1.2 494,098 + SMc01711 0.11 +0.4 494,099 - SMc01711 0.11 +1.5 494,099 - SMc01711 0.11 -0.2
Or see this region's nucleotide sequence