Strain Fitness in Sinorhizobium meliloti 1021 around SMc01337

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01338 and SMc01337 are separated by 571 nucleotidesSMc01337 and SMc01336 are separated by 165 nucleotides SMc01338: SMc01338 - transposase ISRM11/ISRM2011-2, at 1,440,076 to 1,440,681 SMc01338 SMc01337: SMc01337 - hypothetical protein, at 1,441,253 to 1,441,468 SMc01337 SMc01336: SMc01336 - ribonuclease E protein, at 1,441,634 to 1,444,408 SMc01336 Position (kb) 1441 1442Strain fitness (log2 ratio) -1 0 1at 1440.683 kb on + strandat 1440.687 kb on + strandat 1440.835 kb on + strandat 1440.927 kb on - strandat 1441.113 kb on + strandat 1441.114 kb on - strandat 1441.149 kb on + strandat 1441.149 kb on + strandat 1441.150 kb on - strandat 1441.396 kb on - strand, within SMc01337at 1441.396 kb on - strand, within SMc01337at 1441.493 kb on + strandat 1441.496 kb on - strandat 1441.626 kb on + strandat 1441.635 kb on + strandat 1441.635 kb on + strandat 1441.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,440,683 + -0.8
1,440,687 + -0.4
1,440,835 + -0.2
1,440,927 - -0.8
1,441,113 + -0.1
1,441,114 - -0.1
1,441,149 + -0.2
1,441,149 + +0.1
1,441,150 - +0.1
1,441,396 - SMc01337 0.66 +0.1
1,441,396 - SMc01337 0.66 +0.6
1,441,493 + +0.2
1,441,496 - -0.0
1,441,626 + -1.0
1,441,635 + +0.5
1,441,635 + -0.8
1,441,635 + +0.0

Or see this region's nucleotide sequence