Strain Fitness in Sinorhizobium meliloti 1021 around SMc01186

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01187 and SMc01186 are separated by 726 nucleotidesSMc01186 and SMc01243 are separated by 253 nucleotidesSMc01243 and SMc01185 are separated by 469 nucleotides SMc01187: SMc01187 - rare lipoprotein A, at 1,742,755 to 1,743,795 SMc01187 SMc01186: SMc01186 - hypothetical protein, at 1,744,522 to 1,744,782 SMc01186 SMc01243: SMc01243 - tRNA-Ser, at 1,745,036 to 1,745,125 SMc01243 SMc01185: SMc01185 - signal peptide protein, at 1,745,595 to 1,747,082 SMc01185 Position (kb) 1744 1745Strain fitness (log2 ratio) -1 0 1at 1744.021 kb on + strandat 1744.040 kb on + strandat 1744.067 kb on + strandat 1744.099 kb on + strandat 1744.099 kb on + strandat 1744.100 kb on - strandat 1744.100 kb on - strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.105 kb on - strandat 1744.107 kb on + strandat 1744.107 kb on + strandat 1744.249 kb on + strandat 1744.249 kb on + strandat 1744.249 kb on + strandat 1744.250 kb on - strandat 1744.250 kb on - strandat 1744.254 kb on + strandat 1744.264 kb on + strandat 1744.264 kb on + strandat 1744.311 kb on - strandat 1744.311 kb on - strandat 1744.343 kb on - strandat 1744.343 kb on - strandat 1744.375 kb on - strandat 1744.396 kb on + strandat 1744.550 kb on + strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.579 kb on + strand, within SMc01186at 1744.580 kb on - strand, within SMc01186at 1744.775 kb on + strandat 1744.775 kb on + strandat 1744.776 kb on - strandat 1745.219 kb on - strandat 1745.219 kb on - strandat 1745.391 kb on - strandat 1745.478 kb on + strandat 1745.479 kb on - strandat 1745.479 kb on - strandat 1745.535 kb on + strandat 1745.536 kb on - strandat 1745.538 kb on + strandat 1745.538 kb on + strandat 1745.538 kb on + strandat 1745.763 kb on + strand, within SMc01185at 1745.764 kb on - strand, within SMc01185at 1745.766 kb on + strand, within SMc01185at 1745.767 kb on - strand, within SMc01185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,744,021 + -0.0
1,744,040 + +0.1
1,744,067 + -0.9
1,744,099 + -0.3
1,744,099 + -0.0
1,744,100 - +0.1
1,744,100 - -0.1
1,744,104 + -0.3
1,744,104 + -0.1
1,744,104 + +0.4
1,744,104 + +0.1
1,744,105 - -0.9
1,744,107 + -0.1
1,744,107 + -0.1
1,744,249 + +0.1
1,744,249 + -0.0
1,744,249 + +0.7
1,744,250 - +0.0
1,744,250 - -0.3
1,744,254 + -0.8
1,744,264 + +0.0
1,744,264 + -0.1
1,744,311 - +0.1
1,744,311 - -0.3
1,744,343 - +0.1
1,744,343 - -0.0
1,744,375 - -1.1
1,744,396 + -0.4
1,744,550 + SMc01186 0.11 +0.6
1,744,551 - SMc01186 0.11 +1.5
1,744,551 - SMc01186 0.11 +1.1
1,744,551 - SMc01186 0.11 +0.1
1,744,579 + SMc01186 0.22 -0.0
1,744,580 - SMc01186 0.22 +0.1
1,744,775 + -0.2
1,744,775 + +0.2
1,744,776 - +0.9
1,745,219 - +0.1
1,745,219 - +0.4
1,745,391 - -1.1
1,745,478 + -0.8
1,745,479 - -0.2
1,745,479 - -0.3
1,745,535 + +0.5
1,745,536 - +0.3
1,745,538 + -0.4
1,745,538 + -0.6
1,745,538 + -0.4
1,745,763 + SMc01185 0.11 -0.3
1,745,764 - SMc01185 0.11 -0.2
1,745,766 + SMc01185 0.11 -0.4
1,745,767 - SMc01185 0.12 +0.2

Or see this region's nucleotide sequence