Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01146 and SMc01145 are separated by 30 nucleotides SMc01145 and SMc01144 are separated by 236 nucleotides SMc01144 and SMc01143 are separated by 257 nucleotides
SMc01146: SMc01146 - deoxyribonucleotide triphosphate pyrophosphatase, at 405,268 to 405,912
SMc01146
SMc01145: SMc01145 - hypothetical protein, at 405,943 to 406,356
SMc01145
SMc01144: SMc01144 - ribonuclease PH, at 406,593 to 407,312
SMc01144
SMc01143: SMc01143 - heat-inducible transcription repressor, at 407,570 to 408,649
SMc01143
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1 at 405.870 kb on + strand at 405.870 kb on + strand at 405.870 kb on + strand at 405.914 kb on + strand at 405.915 kb on - strand at 405.915 kb on - strand at 405.915 kb on - strand at 406.007 kb on + strand, within SMc01145 at 406.287 kb on - strand, within SMc01145 at 406.287 kb on - strand, within SMc01145 at 406.429 kb on - strand at 406.443 kb on - strand at 406.594 kb on + strand at 406.602 kb on + strand at 406.603 kb on - strand at 406.780 kb on + strand, within SMc01144 at 406.781 kb on - strand, within SMc01144 at 406.781 kb on - strand, within SMc01144 at 407.224 kb on - strand, within SMc01144 at 407.445 kb on + strand at 407.446 kb on - strand at 407.457 kb on + strand at 407.530 kb on + strand at 407.530 kb on + strand at 407.531 kb on - strand at 407.531 kb on - strand at 407.531 kb on - strand at 407.532 kb on + strand at 407.532 kb on + strand at 407.533 kb on - strand at 407.533 kb on - strand at 407.533 kb on - strand at 407.552 kb on + strand at 407.553 kb on - strand at 407.575 kb on - strand at 407.657 kb on + strand at 407.658 kb on - strand at 407.658 kb on - strand at 407.985 kb on + strand, within SMc01143 at 407.986 kb on - strand, within SMc01143 at 407.986 kb on - strand, within SMc01143 at 408.270 kb on + strand, within SMc01143
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 405,870 + -0.7 405,870 + -0.3 405,870 + -1.2 405,914 + -0.5 405,915 - +0.1 405,915 - -0.9 405,915 - -0.1 406,007 + SMc01145 0.15 -1.7 406,287 - SMc01145 0.83 -0.2 406,287 - SMc01145 0.83 +0.2 406,429 - +0.2 406,443 - -0.3 406,594 + -0.3 406,602 + -0.4 406,603 - +0.3 406,780 + SMc01144 0.26 +1.4 406,781 - SMc01144 0.26 +0.2 406,781 - SMc01144 0.26 -0.5 407,224 - SMc01144 0.88 +0.1 407,445 + +0.1 407,446 - -0.8 407,457 + -1.7 407,530 + -0.5 407,530 + +0.0 407,531 - -0.2 407,531 - -0.0 407,531 - -0.6 407,532 + +0.3 407,532 + +0.8 407,533 - -0.4 407,533 - -0.3 407,533 - +1.3 407,552 + -0.4 407,553 - -0.1 407,575 - +0.1 407,657 + +0.9 407,658 - +0.1 407,658 - -0.3 407,985 + SMc01143 0.38 -0.9 407,986 - SMc01143 0.39 -0.4 407,986 - SMc01143 0.39 -0.2 408,270 + SMc01143 0.65 -0.7
Or see this region's nucleotide sequence