Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01136 and SMc01135 are separated by 340 nucleotides SMc01135 and SMc01134 are separated by 103 nucleotides SMc01134 and SMc01133 are separated by 180 nucleotides SMc01133 and SMc01132 are separated by 27 nucleotides
SMc01136: SMc01136 - hypothetical protein, at 414,402 to 415,070
SMc01136
SMc01135: SMc01135 - protease IV transmembrane protein, at 415,411 to 416,370
SMc01135
SMc01134: SMc01134 - integration host factor subunit beta, at 416,474 to 416,785
SMc01134
SMc01133: SMc01133 - hypothetical protein, at 416,966 to 417,310
SMc01133
SMc01132: SMc01132 - hypothetical protein, at 417,338 to 417,796
SMc01132
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.125 kb on - strand at 415.219 kb on - strand at 415.304 kb on - strand at 415.304 kb on - strand at 415.329 kb on - strand at 415.329 kb on - strand at 415.333 kb on + strand at 415.333 kb on + strand at 415.334 kb on - strand at 415.356 kb on + strand at 415.356 kb on + strand at 415.356 kb on + strand at 415.357 kb on - strand at 415.357 kb on - strand at 415.357 kb on - strand at 415.538 kb on + strand, within SMc01135 at 415.538 kb on + strand, within SMc01135 at 415.585 kb on - strand, within SMc01135 at 415.587 kb on + strand, within SMc01135 at 415.690 kb on + strand, within SMc01135 at 415.690 kb on + strand, within SMc01135 at 415.691 kb on - strand, within SMc01135 at 415.691 kb on - strand, within SMc01135 at 415.691 kb on - strand, within SMc01135 at 415.691 kb on - strand, within SMc01135 at 416.005 kb on + strand, within SMc01135 at 416.005 kb on + strand, within SMc01135 at 416.005 kb on + strand, within SMc01135 at 416.006 kb on - strand, within SMc01135 at 416.767 kb on + strand at 416.878 kb on + strand at 416.878 kb on + strand at 416.878 kb on + strand at 416.879 kb on - strand at 416.879 kb on - strand at 416.886 kb on + strand at 416.886 kb on + strand at 416.893 kb on - strand at 416.942 kb on + strand at 416.943 kb on - strand at 416.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 415,125 - -2.4 415,219 - +0.0 415,304 - +0.3 415,304 - +1.5 415,329 - +0.7 415,329 - -0.3 415,333 + +2.4 415,333 + +0.1 415,334 - +0.1 415,356 + -1.2 415,356 + -0.5 415,356 + -0.8 415,357 - +0.0 415,357 - +0.4 415,357 - +1.1 415,538 + SMc01135 0.13 +0.3 415,538 + SMc01135 0.13 +0.3 415,585 - SMc01135 0.18 +0.6 415,587 + SMc01135 0.18 +0.4 415,690 + SMc01135 0.29 -0.3 415,690 + SMc01135 0.29 +1.6 415,691 - SMc01135 0.29 +0.1 415,691 - SMc01135 0.29 +0.6 415,691 - SMc01135 0.29 +0.2 415,691 - SMc01135 0.29 +0.3 416,005 + SMc01135 0.62 +0.0 416,005 + SMc01135 0.62 +1.4 416,005 + SMc01135 0.62 -0.2 416,006 - SMc01135 0.62 +0.1 416,767 + +0.2 416,878 + -0.4 416,878 + +0.9 416,878 + +1.1 416,879 - +0.5 416,879 - -0.7 416,886 + -0.6 416,886 + -0.6 416,893 - +0.1 416,942 + -0.2 416,943 - -0.1 416,986 + +0.3
Or see this region's nucleotide sequence