Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01128 and SMc01127 are separated by 117 nucleotides SMc01127 and SMc01126 are separated by 278 nucleotides
SMc01128: SMc01128 - sensor histidine kinase transmembrane protein, at 420,990 to 423,080
SMc01128
SMc01127: SMc01127 - hypothetical protein, at 423,198 to 424,088
SMc01127
SMc01126: SMc01126 - malic enzyme, at 424,367 to 426,652
SMc01126
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.315 kb on + strand, within SMc01128 at 422.316 kb on - strand at 422.484 kb on + strand, within SMc01128 at 422.484 kb on + strand, within SMc01128 at 422.484 kb on + strand, within SMc01128 at 422.485 kb on - strand, within SMc01128 at 422.539 kb on - strand, within SMc01128 at 422.896 kb on + strand at 422.897 kb on - strand at 423.119 kb on + strand at 423.119 kb on + strand at 423.120 kb on - strand at 423.120 kb on - strand at 423.138 kb on + strand at 423.138 kb on + strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.139 kb on - strand at 423.161 kb on + strand at 423.162 kb on - strand at 423.162 kb on - strand at 423.197 kb on + strand at 423.197 kb on + strand at 423.198 kb on - strand at 423.198 kb on - strand at 423.198 kb on - strand at 423.249 kb on + strand at 423.249 kb on + strand at 423.250 kb on - strand at 423.364 kb on - strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.473 kb on + strand, within SMc01127 at 423.584 kb on - strand at 423.702 kb on + strand, within SMc01127 at 423.800 kb on + strand, within SMc01127 at 423.930 kb on + strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.931 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 423.933 kb on - strand, within SMc01127 at 424.129 kb on - strand at 424.138 kb on + strand at 424.139 kb on - strand at 424.229 kb on - strand at 424.229 kb on - strand at 424.229 kb on - strand at 424.642 kb on - strand, within SMc01126 at 424.859 kb on - strand, within SMc01126 at 424.950 kb on + strand, within SMc01126 at 424.970 kb on - strand, within SMc01126 at 425.061 kb on + strand at 425.061 kb on + strand, within SMc01126 at 425.061 kb on + strand, within SMc01126 at 425.062 kb on - strand, within SMc01126 at 425.062 kb on - strand, within SMc01126
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 422,315 + SMc01128 0.63 +0.1 422,316 - +1.1 422,484 + SMc01128 0.71 +0.5 422,484 + SMc01128 0.71 -0.1 422,484 + SMc01128 0.71 +0.5 422,485 - SMc01128 0.71 -0.2 422,539 - SMc01128 0.74 +0.5 422,896 + +0.5 422,897 - -0.4 423,119 + +0.3 423,119 + +0.7 423,120 - +0.4 423,120 - -2.0 423,138 + -0.2 423,138 + +0.6 423,139 - +0.1 423,139 - +0.3 423,139 - -0.4 423,139 - -0.1 423,161 + -0.5 423,162 - +0.3 423,162 - -0.1 423,197 + -0.5 423,197 + -1.6 423,198 - +0.5 423,198 - -0.1 423,198 - -0.2 423,249 + +1.5 423,249 + +0.5 423,250 - +0.3 423,364 - SMc01127 0.19 +0.3 423,473 + SMc01127 0.31 +1.2 423,473 + SMc01127 0.31 +0.1 423,473 + SMc01127 0.31 +0.6 423,584 - +2.1 423,702 + SMc01127 0.57 +1.4 423,800 + SMc01127 0.68 +0.4 423,930 + SMc01127 0.82 -1.4 423,931 - SMc01127 0.82 +0.1 423,931 - SMc01127 0.82 +1.2 423,933 - SMc01127 0.82 +0.8 423,933 - SMc01127 0.82 -0.3 423,933 - SMc01127 0.82 -2.4 424,129 - +0.6 424,138 + +0.2 424,139 - +0.3 424,229 - -0.7 424,229 - -1.0 424,229 - -0.3 424,642 - SMc01126 0.12 +0.2 424,859 - SMc01126 0.22 +1.3 424,950 + SMc01126 0.26 -0.5 424,970 - SMc01126 0.26 -0.6 425,061 + +1.4 425,061 + SMc01126 0.30 +0.5 425,061 + SMc01126 0.30 -0.8 425,062 - SMc01126 0.30 +0.4 425,062 - SMc01126 0.30 -2.0
Or see this region's nucleotide sequence