Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01118 and SMc01117 are separated by 54 nucleotides SMc01117 and SMc01116 are separated by 119 nucleotides SMc01116 and SMc01115 are separated by 49 nucleotides
SMc01118: SMc01118 - hypothetical protein, at 437,108 to 437,764
SMc01118
SMc01117: SMc01117 - acetyltransferase, at 437,819 to 438,322
SMc01117
SMc01116: SMc01116 - acyltransferase transmembrane protein, at 438,442 to 439,320
SMc01116
SMc01115: SMc01115 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 439,370 to 440,788
SMc01115
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1 at 437.786 kb on + strand at 437.786 kb on + strand at 438.376 kb on + strand at 438.385 kb on - strand at 438.675 kb on + strand, within SMc01116 at 438.676 kb on - strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.142 kb on - strand, within SMc01116 at 439.169 kb on + strand, within SMc01116 at 439.170 kb on - strand, within SMc01116 at 439.170 kb on - strand, within SMc01116 at 439.359 kb on - strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.475 kb on + strand at 439.476 kb on - strand at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.601 kb on + strand, within SMc01115 at 439.601 kb on + strand, within SMc01115 at 439.602 kb on - strand, within SMc01115 at 439.744 kb on - strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.820 kb on + strand, within SMc01115 at 439.821 kb on - strand, within SMc01115 at 439.945 kb on - strand, within SMc01115 at 439.949 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.194 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 437,786 + +0.1 437,786 + +0.7 438,376 + +1.1 438,385 - +0.3 438,675 + SMc01116 0.27 +0.2 438,676 - SMc01116 0.27 +0.3 439,027 + SMc01116 0.67 +0.4 439,027 + SMc01116 0.67 -0.3 439,141 + SMc01116 0.80 -1.5 439,141 + SMc01116 0.80 -0.1 439,142 - SMc01116 0.80 +1.5 439,169 + SMc01116 0.83 +1.0 439,170 - SMc01116 0.83 +0.2 439,170 - SMc01116 0.83 +0.3 439,359 - +0.2 439,454 + +0.3 439,454 + +0.5 439,454 + -0.7 439,454 + -0.3 439,454 + -1.0 439,454 + -0.3 439,454 + -0.3 439,455 - +0.4 439,455 - +0.2 439,455 - -0.4 439,455 - -0.6 439,455 - -0.2 439,475 + +0.1 439,476 - -0.9 439,517 + SMc01115 0.10 -0.1 439,517 + SMc01115 0.10 -0.1 439,517 + SMc01115 0.10 -0.2 439,517 + SMc01115 0.10 +1.1 439,517 + SMc01115 0.10 -0.2 439,518 - SMc01115 0.10 -0.1 439,518 - SMc01115 0.10 -2.3 439,518 - SMc01115 0.10 -0.5 439,601 + SMc01115 0.16 -1.0 439,601 + SMc01115 0.16 +0.3 439,602 - SMc01115 0.16 +0.4 439,744 - SMc01115 0.26 +0.1 439,757 + SMc01115 0.27 -0.9 439,757 + SMc01115 0.27 +0.5 439,757 + SMc01115 0.27 +0.7 439,757 + SMc01115 0.27 +0.0 439,757 + SMc01115 0.27 -0.3 439,758 - SMc01115 0.27 +0.3 439,758 - SMc01115 0.27 +0.4 439,758 - SMc01115 0.27 -0.1 439,820 + SMc01115 0.32 -0.1 439,821 - SMc01115 0.32 -0.1 439,945 - SMc01115 0.41 +0.1 439,949 + SMc01115 0.41 -0.6 440,155 + SMc01115 0.55 -1.2 440,155 + SMc01115 0.55 +0.6 440,155 + SMc01115 0.55 +0.1 440,156 - SMc01115 0.55 -0.3 440,156 - SMc01115 0.55 -2.0 440,193 + SMc01115 0.58 -0.7 440,193 + SMc01115 0.58 +0.3 440,194 - SMc01115 0.58 +0.2 440,229 - SMc01115 0.61 -1.8 440,229 - SMc01115 0.61 +0.3
Or see this region's nucleotide sequence